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Crimean-Congo Hemorrhagic Fever Virus
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PP_000RDWB.3
Version 3
PP_000RDWB.1
Previous version
PP_000RDWB.2
Previous version
PP_000RDWB.3
Latest version
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Display Name: Pakistan/PP_000RDWB.3/2023-08-26
M. Umair,
S. A. Haider,
Z. Jamal,
M. Ammar,
R. Hakim,
Q. Ali &
M. Salman
Sample details
Collection date
2023-08-26
Country
Pakistan
Isolate name
CCHF/NIHPAK-19/2023
Data use terms
Data use terms
OPEN
✕
Data use terms history
Changed
User
Data use terms
2024-08-27 12:11
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
National Institute of Health, Department of Virology
INSDC
INSDC accession L
OR964926.1
INSDC accession M
OR964937.1
INSDC accession S
OR964915.1
NCBI release date
2023-12-26
Host
Host taxon ID
9606
Host name - scientific
Homo sapiens
Alignment and QC metrics L
Length L
12094
Completeness L
96.89%
# of SNPs L
1442
# of inserted bases L
23
# of deleted bases L
3
# of ambiguous bases L
0
# of unknown bases L
342
# of frame shifts L
0
# of stop codons L
0
Alignment and QC metrics M
Length M
5258
Completeness M
96.76%
# of SNPs M
618
# of inserted bases M
1
# of deleted bases M
0
# of ambiguous bases M
0
# of unknown bases M
65
# of frame shifts M
0
# of stop codons M
0
Alignment and QC metrics S
Length S
1591
Completeness S
93.06%
# of SNPs S
200
# of inserted bases S
1
# of deleted bases S
0
# of ambiguous bases S
0
# of unknown bases S
34
# of frame shifts S
0
# of stop codons S
0
Submission details
Submission ID
OR964926.1.L/OR964937.1.M/OR964915.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-10-29 17:10:51 UTC
Date released
2024-10-29 17:16:10 UTC
Earliest release date
2023-12-26
Lineage
Segment S Lineage
IV.1
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
L:
G
32
A
L:
A
35
G
L:
T
49
C
L:
T
61
C
L:
C
63
G
L:
C
64
T
L:
T
65
C
L:
T
66
C
L:
G
69
A
L:
G
71
T
L:
G
88
A
L:
G
93
A
L:
A
109
G
L:
G
119
A
L:
A
124
G
L:
T
131
A
L:
C
136
T
L:
T
139
C
Show more
M
M:
C
82
T
M:
C
85
T
M:
T
86
C
M:
A
107
G
M:
A
117
G
M:
C
119
T
M:
C
120
T
M:
T
122
C
M:
C
126
T
M:
A
128
G
M:
T
137
C
M:
G
143
A
M:
A
146
G
M:
G
147
A
M:
G
149
A
M:
C
153
A
M:
T
155
C
M:
T
159
C
Show more
S
S:
A
50
G
S:
G
54
A
S:
G
67
A
S:
T
79
C
S:
G
99
A
S:
G
100
A
S:
A
109
G
S:
A
118
G
S:
C
142
T
S:
C
166
T
S:
G
169
A
S:
T
172
C
S:
C
178
A
S:
T
182
C
S:
T
199
C
S:
C
217
T
S:
G
229
A
S:
A
268
C
Show more
Deletions
L:12028-12030
Insertions
ins_L:58:T, ins_L:11925:GT, ins_L:12081:TTTAATATCCAACTACTCCA, ins_M:5166:G, ins_S:1577:A
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
9
V
GPC:
L
10
F
GPC:
E
19
K
GPC:
H
21
N
GPC:
S
23
L
GPC:
E
26
G
GPC:
R
28
E
GPC:
D
33
H
GPC:
T
34
V
GPC:
G
39
D
GPC:
N
41
S
GPC:
P
42
Q
GPC:
S
44
P
GPC:
S
53
P
GPC:
I
54
V
GPC:
L
56
P
GPC:
Y
77
H
GPC:
P
80
S
Show more
NP
NP:
R
15
K
NP:
V
83
A
NP:
D
116
E
NP:
T
124
S
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
NP:
I
246
V
NP:
V
254
I
NP:
R
270
K
NP:
S
301
G
NP:
A
307
V
NP:
Q
405
L
NP:
V
436
I
RdRp
RdRp:
S
6
N
RdRp:
G
15
S
RdRp:
S
19
T
RdRp:
Y
60
N
RdRp:
R
63
H
RdRp:
S
67
V
RdRp:
R
80
K
RdRp:
V
82
I
RdRp:
T
163
A
RdRp:
M
172
V
RdRp:
S
205
P
RdRp:
K
275
R
RdRp:
I
279
V
RdRp:
S
498
G
RdRp:
I
505
T
RdRp:
A
508
V
RdRp:
K
522
R
RdRp:
T
720
S
Show more
Deletions
None
Insertions
None
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