Pathoplexus
Crimean-Congo Hemorrhagic Fever Virus
Crimean-Congo Hemorrhagic Fever Virus
Ebola Sudan
Ebola Zaire
HMPV
Mpox Virus
RSV-A
RSV-B
West Nile Virus
Browse
Submit
SeqSets
News
About
Docs
Login
Pathoplexus
Browse
Submit
SeqSets
News
About
Docs
Login
API docs
Governance
Funding
Contact
Status
PP_000RDPR.3
Version 3
PP_000RDPR.1
Previous version
PP_000RDPR.2
Previous version
PP_000RDPR.3
Latest version
All versions
Download
Download FASTA
Download metadata TSV
Display Name: Iraq/PP_000RDPR.3/2023-08-15
Sulaiman, R. R.;
Babashekh, M. O.
Submission details
Submission ID
OR713753.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-10-29 17:10:51 UTC
Date released
2024-10-29 17:16:10 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-08-27 12:11
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
University of Sulaimani, College of Veterinary Medicine, Microbiology
Alignment and QC metrics S
Completeness S
30.86%
Length S
516
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
69
Total unknown nucs S
0
Sample details
Earliest release date
2024-04-27
Collection country
Iraq
Collection date
2023-08-15
Collection date (lower bound)
2023-08-15
Collection date (upper bound)
2023-08-15
Isolate name
CCHF/Ranya/Iraq
Host
Host name - scientific
Ixodoidea
Host taxon ID
297308
INSDC
INSDC accession S
OR713753.1
NCBI release date
2024-04-27
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
S
S:
T
157
C
S:
C
166
T
S:
G
169
A
S:
C
178
A
S:
T
182
C
S:
C
187
T
S:
G
190
A
S:
G
196
A
S:
A
209
G
S:
C
214
T
S:
C
217
T
S:
G
229
A
S:
C
235
T
S:
T
250
A
S:
G
256
A
S:
G
259
A
S:
A
268
T
S:
G
271
A
Show more
Deletions
None
Insertions
None
Amino acid mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
NP
NP:
S
52
G
NP:
D
116
E
NP:
T
124
S
NP:
G
125
N
NP:
H
195
R
NP:
D
199
E
Deletions
None
Insertions
None
Load sequences
Report an issue with this sequence or metadata
Create GitHub issue