PP_000RDNT.2

Display Name: Iraq/PP_000RDNT.2/2023-07-24
Sulaiman, R. R.; Babashekh, M. O.

Submission details

Submission ID
OR713752.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-09-26 15:01:57 UTC
Date released
2024-09-26 15:22:15 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
University of Sulaimani, College of Veterinary Medicine, Microbiology

Alignment states and QC metrics S

Completeness S
30.86%
Length S
516
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
71
Total unknown nucs S
0

Sample details

Collection country
Iraq
Collection date
2023-07-24
Isolate name
CCHF/Kalar/Iraq

Host

Host name scientific
Ixodoidea
Host taxon id
297308

INSDC

INSDC accession S
OR713752.1
NCBI release date
2024-04-27

Nucleotide mutations

Substitutions

S

  • S:T157C
  • S:C166T
  • S:G169A
  • S:G171A
  • S:C178A
  • S:T182C
  • S:C187T
  • S:G190A
  • S:G196A
  • S:A209G
  • S:C214T
  • S:C217T
  • S:G229A
  • S:C235T
  • S:T250A
  • S:G256A
  • S:G259A
  • S:A268T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    NP

  • NP:S39N
  • NP:S52G
  • NP:D116E
  • NP:T124S
  • NP:G125N
  • NP:R177K
  • NP:H195R
  • NP:D199E
    • Deletions
    None
    Insertions
    None