PP_000RDMV.2

Display Name: Kazakhstan/PP_000RDMV.2/2022-01-01
Nurmakhanov, T. I.; Turebekov, N. A.; Tukhanova, N. B.; Tokmurziyeva, G. Z.; Sadovskaya, V. P.; Shevtsov, A. B.

Submission details

Submission ID
OR633378.1.L/OR633376.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-09-26 15:01:57 UTC
Date released
2024-09-26 15:22:15 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
National center for biotechnology, Kazakhstan, Laboratory of applied genetics

Alignment states and QC metrics L

Completeness L
6.21%
Length L
752
Total ambiguous nucs L
0
Total deleted nucs L
0
Total frame shifts L
0
Total inserted nucs L
0
Total SNPs L
110
Total unknown nucs L
0

Alignment states and QC metrics S

Completeness S
41.99%
Length S
702
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
84
Total unknown nucs S
0

Sample details

Collection country
Kazakhstan
Collection date
2022-01-01

Host

Host name scientific
Hyalomma scupense
Host taxon id
1260755

INSDC

INSDC accession L
OR633378.1
INSDC accession S
OR633376.1
NCBI release date
2023-10-29

Nucleotide mutations

Substitutions

L

  • L:A379G
  • L:A385T
  • L:T403A
  • L:A416G
  • L:T430C
  • L:T442A
  • L:T451C
  • L:T466C
  • L:C475T
  • L:C481T
  • L:T499C
  • L:C505T
  • L:T509C
  • L:G511A
  • L:A523G
  • L:G538T
  • L:G543A
  • L:T550G

    • S

  • S:A50G
  • S:G54A
  • S:G67A
  • S:G76A
  • S:T79C
  • S:C82T
  • S:G99A
  • S:A109G
  • S:A118G
  • S:G136A
  • S:T144A
  • S:G169A
  • S:T172C
  • S:C178A
  • S:T182C
  • S:G190A
  • S:G196A
  • S:T199C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    NP

  • NP:R15K
  • NP:F30Y
  • NP:V83A
  • NP:S105L
  • NP:D116E
  • NP:T124S
  • NP:G125N
  • NP:H195R
  • NP:D199E

    • RdRp

  • RdRp:I114V
  • RdRp:R156K
  • RdRp:T163A
  • RdRp:A168T
  • RdRp:M172V
  • RdRp:R174K
  • RdRp:S205P
  • RdRp:N206Y
  • RdRp:K275R
  • RdRp:I279V
  • RdRp:R302K
    • Deletions
    None
    Insertions
    None