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Status
PP_000RDKZ.3
All versions
PP_000RDKZ.1
(Revised)
PP_000RDKZ.2
(Revised)
PP_000RDKZ.3
(Latest version)
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Display Name: Iran/PP_000RDKZ.3/2022-01-01
Sarmadi,
S.; Najafi,
H.; Ziafati Kafi,
Z.; Sadri,
N.; Jamiri,
F.; Bakhshi,
A.; Abbassioun,
A.
Submission details
Submission ID
PP107911.1.S
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-10-29 17:10:51 UTC
Date released
2024-10-29 17:16:10 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-08-27 12:11
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
University of Tehran, Microbiology & Immunology
Alignment states and QC metrics S
Completeness S
59.81%
Length S
151
Total ambiguous nucs S
0
Total deleted nucs S
849
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
23
Total unknown nucs S
0
Sample details
Collection country
Iran
Collection date
2022-01-01
Isolate name
UT-SS2
Host
Host name scientific
Ixodoidea
Host taxon id
297308
INSDC
INSDC accession S
PP107911.1
NCBI release date
2024-01-24
Nucleotide mutations
Substitutions
S
S:
T
304
C
S:
C
310
T
S:
T
313
C
S:
A
322
T
S:
A
325
G
S:
T
334
G
S:
A
337
G
S:
G
346
A
S:
C
361
T
S:
G
367
A
S:
C
370
A
S:
A
394
G
S:
G
397
A
S:
C
400
T
S:
C
403
G
S:
C
406
T
S:
G
409
C
S:
G
418
A
Show more
Deletions
S:445-1293
Insertions
None
Amino acid mutations
Substitutions
NP
NP:
D
116
E
NP:
T
124
S
NP:
G
125
S
Deletions
None
Insertions
None
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