PP_000RDKZ.3

Display Name: Iran/PP_000RDKZ.3/2022-01-01
Sarmadi, S.; Najafi, H.; Ziafati Kafi, Z.; Sadri, N.; Jamiri, F.; Bakhshi, A.; Abbassioun, A.

Submission details

Submission ID
PP107911.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-10-29 17:10:51 UTC
Date released
2024-10-29 17:16:10 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
University of Tehran, Microbiology & Immunology

Alignment states and QC metrics S

Completeness S
59.81%
Length S
151
Total ambiguous nucs S
0
Total deleted nucs S
849
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
23
Total unknown nucs S
0

Sample details

Collection country
Iran
Collection date
2022-01-01
Isolate name
UT-SS2

Host

Host name scientific
Ixodoidea
Host taxon id
297308

INSDC

INSDC accession S
PP107911.1
NCBI release date
2024-01-24

Nucleotide mutations

Substitutions

S

  • S:T304C
  • S:C310T
  • S:T313C
  • S:A322T
  • S:A325G
  • S:T334G
  • S:A337G
  • S:G346A
  • S:C361T
  • S:G367A
  • S:C370A
  • S:A394G
  • S:G397A
  • S:C400T
  • S:C403G
  • S:C406T
  • S:G409C
  • S:G418A
    • Deletions
    S:445-1293
    Insertions
    None

    Amino acid mutations

    Substitutions

    NP

  • NP:D116E
  • NP:T124S
  • NP:G125S
    • Deletions
    None
    Insertions
    None