PP_000RDKZ.3

Display Name: Iran/PP_000RDKZ.3/2022
S. Sarmadi, H. Najafi, Z. Ziafati Kafi, N. Sadri, F. Jamiri, A. Bakhshi & A. Abbassioun

Submission details

Submission ID
PP107911.1.S
Submitting group
Date submitted
2024-10-29 17:10:51 UTC
Date released
2024-10-29 17:16:10 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
University of Tehran, Microbiology & Immunology

Alignment and QC metrics S

Completeness S
59.81%
Length S
151
Total ambiguous nucs S
0
Total deleted nucs S
849
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
23
Total unknown nucs S
0

Sample details

Earliest release date
2024-01-24
Collection country
Iran
Collection date
2022
Collection date (lower bound)
2022-01-01
Collection date (upper bound)
2022-12-31
Isolate name
UT-SS2

Host

Host name - scientific
Ixodoidea
Host taxon ID

INSDC

INSDC accession S
NCBI release date
2024-01-24

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:T304C
  • S:C310T
  • S:T313C
  • S:A322T
  • S:A325G
  • S:T334G
  • S:A337G
  • S:G346A
  • S:C361T
  • S:G367A
  • S:C370A
  • S:A394G
  • S:G397A
  • S:C400T
  • S:C403G
  • S:C406T
  • S:G409C
  • S:G418A
    • Deletions
    S:445-1293
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:D116E
  • NP:T124S
  • NP:G125S
    • Deletions
    None
    Insertions
    None

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