PP_000RDH3.2

Display Name: Iran/PP_000RDH3.2/2022-11-01
Mohammadi-Ghalehbin, B.; Soozangar, N.; Jeddi, F.; Mirzanejad-Asl, H.; Molaei, S.; Habibzadeh, S.; Peeri Doghaheh, H.; Mohammadshahi, J.; Spotin, A.

Submission details

Submission ID
OR391532.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-09-26 15:01:57 UTC
Date released
2024-09-26 15:22:15 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Tabriz University od Medical Sceinces, Parasitolgy and Mycology

Alignment and QC metrics S

Completeness S
37.98%
Length S
467
Total ambiguous nucs S
0
Total deleted nucs S
168
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
70
Total unknown nucs S
0

Sample details

Earliest release date
2023-10-07
Collection country
Iran
Collection date
2022-11
Collection date (lower bound)
2022-11-01
Collection date (upper bound)
2022-11-30
Isolate name
55-203334

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession S
OR391532.1
NCBI release date
2023-10-07

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:C187T
  • S:G189A
  • S:T199C
  • S:T211C
  • S:C217T
  • S:C244T
  • S:T250G
  • S:G262A
  • S:A268C
  • S:G271A
  • S:T274C
  • S:T283C
  • S:G292A
  • S:C295T
  • S:A298T
  • S:T304C
  • S:C310T
  • S:T313C
    • Deletions
    S:647-814
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:R45K
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
  • NP:H195R
  • NP:D199E
    • Deletions
    None
    Insertions
    None

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