PP_000RDG6.3

Display Name: Iran/PP_000RDG6.3/2022-10
B. Mohammadi-Ghalehbin, N. Soozangar, F. Jeddi, H. Mirzanejad-Asl, S. Molaei, S. Habibzadeh, H. Peeri Doghaheh, J. Mohammadshahi & A. Spotin

Sample details

Collection date
2022-10
Country
Iran
Isolate name
54-203332

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Tabriz University od Medical Sceinces, Parasitolgy and Mycology

INSDC

INSDC accession S
NCBI release date
2023-10-07

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics S

Length S
467
Completeness S
27.93%
# of SNPs S
72
# of inserted bases S
0
# of deleted bases S
0
# of ambiguous bases S
0
# of unknown bases S
0
# of frame shifts S
0
# of stop codons S
0

Submission details

Submission ID
OR391531.1.S
Submitting group
Date submitted
2024-10-29 17:10:51 UTC
Date released
2024-10-29 17:16:10 UTC
Earliest release date
2023-10-07

Lineage

Segment S Lineage
V

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:C187T
  • S:G189A
  • S:T199C
  • S:T211C
  • S:C217T
  • S:C244T
  • S:T250G
  • S:G262A
  • S:A268C
  • S:G271A
  • S:T274C
  • S:T283C
  • S:G292A
  • S:C295T
  • S:A298T
  • S:T304C
  • S:C310T
  • S:T313C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:R45K
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
  • NP:H195R
  • NP:D199E
    • Deletions
    None
    Insertions
    None

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