PP_000RC13.2

Display Name: Turkey/PP_000RC13.2/2021-01-01
Kalaycioglu, A. T.; Oguzoglu, T. C.; Ari, O.; Engin, A.; Bakir, M.; Durmaz, R.

Submission details

Submission ID
OQ935545.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-09-26 15:01:57 UTC
Date released
2024-09-26 15:20:44 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Karadeniz Technical University, Faculty of Pharmacy Department of Pharmaceutical Microbiology

Alignment and QC metrics M

Completeness M
16.77%
Frame shifts M
GPC:525-1685(nt:1663-5147)
Length M
860
Total ambiguous nucs M
0
Total deleted nucs M
40
Total frame shifts M
1
Total inserted nucs M
0
Total SNPs M
125
Total unknown nucs M
0

Sample details

Earliest release date
2023-08-15
Collection country
Turkey
Collection date
2021
Collection date (lower bound)
2021-01-01
Collection date (upper bound)
2021-12-31
Isolate name
TR-SIVAS-C29M-2021

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession M
OQ935545.1
NCBI release date
2023-08-15

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • M:A1620C
  • M:T1673C
  • M:A1688G
  • M:A1694G
  • M:G1703A
  • M:T1706A
  • M:C1718T
  • M:G1720A
  • M:C1721T
  • M:C1736T
  • M:G1739A
  • M:C1745T
  • M:C1754T
  • M:T1763C
  • M:C1766T
  • M:T1772C
  • M:C1781T
  • M:A1784G
    • Deletions
    M:1623-1662
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions
    Deletions
    GPC:511-524
    Insertions
    None

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