PP_000RC05.2

Display Name: Turkey/PP_000RC05.2/2021-01-01
Kalaycioglu, A. T.; Oguzoglu, T. C.; Ari, O.; Engin, A.; Bakir, M.; Durmaz, R.

Submission details

Submission ID
OQ935544.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-09-26 15:01:57 UTC
Date released
2024-09-26 15:20:44 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Karadeniz Technical University, Faculty of Pharmacy Department of Pharmaceutical Microbiology

Alignment states and QC metrics M

Completeness M
16.08%
Length M
863
Total ambiguous nucs M
0
Total deleted nucs M
0
Total frame shifts M
0
Total inserted nucs M
0
Total SNPs M
138
Total unknown nucs M
0

Sample details

Collection country
Turkey
Collection date
2021
Collection date (lower bound)
2021-01-01
Collection date (upper bound)
2021-12-31
Isolate name
TR-SIVAS-C27M-2021

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession M
OQ935544.1
NCBI release date
2023-08-15

Nucleotide mutations

Substitutions

M

  • M:A1658G
  • M:C1661A
  • M:A1662G
  • M:T1673C
  • M:A1688G
  • M:A1694G
  • M:G1703A
  • M:A1704G
  • M:T1706A
  • M:C1715T
  • M:C1718T
  • M:G1720A
  • M:C1721T
  • M:C1724T
  • M:G1739A
  • M:C1745T
  • M:C1754T
  • M:T1763C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    GPC

  • GPC:S524G
  • GPC:T538A
  • GPC:G543D
  • GPC:R579K
  • GPC:N592T
  • GPC:V598T
  • GPC:Y606F
  • GPC:R609K
  • GPC:A630V
  • GPC:T633S
  • GPC:I637V
  • GPC:K669H
  • GPC:I670V
  • GPC:K675R
  • GPC:K688R
  • GPC:L707F
  • GPC:I711L
  • GPC:L714S
    • Deletions
    None
    Insertions
    None