PP_000RBZ7.3

Display Name: Turkey/PP_000RBZ7.3/2021
A. T. Kalaycioglu, T. C. Oguzoglu, O. Ari, A. Engin, M. Bakir & R. Durmaz

Sample details

Collection date
2021
Country
Turkey
Isolate name
TR-SIVAS-C26M-2021

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Karadeniz Technical University, Faculty of Pharmacy Department of Pharmaceutical Microbiology

INSDC

INSDC accession M
NCBI release date
2023-08-15

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics M

Length M
880
Completeness M
16.40%
# of SNPs M
146
# of inserted bases M
0
# of deleted bases M
0
# of ambiguous bases M
0
# of unknown bases M
0
# of frame shifts M
0
# of stop codons M
0

Submission details

Submission ID
OQ935543.1.M
Submitting group
Date submitted
2024-10-29 17:10:51 UTC
Date released
2024-10-29 17:15:40 UTC
Earliest release date
2023-08-15

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • M:A1640G
  • M:G1642A
  • M:T1644C
  • M:G1646A
  • M:T1649G
  • M:A1652C
  • M:A1658G
  • M:C1661A
  • M:A1662G
  • M:T1673C
  • M:A1688G
  • M:A1694G
  • M:G1703A
  • M:T1706A
  • M:C1715T
  • M:C1718T
  • M:G1720A
  • M:C1721T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:R517K
  • GPC:S524G
  • GPC:G543D
  • GPC:R579K
  • GPC:N592T
  • GPC:V598T
  • GPC:Y606F
  • GPC:R609K
  • GPC:A630V
  • GPC:T633S
  • GPC:I637V
  • GPC:K669H
  • GPC:I670V
  • GPC:K675R
  • GPC:L707F
  • GPC:I711L
  • GPC:L714S
  • GPC:V718T
    • Deletions
    None
    Insertions
    None

    Report an issue with this sequence or metadata

    Create GitHub issue