PP_000RBVF.3

Display Name: Turkey/PP_000RBVF.3/2021-01-01
Kalaycioglu, A.; Oguzoglu, T. C.; Ari, O.; Durmaz, R.; Engin, A.; Bakir, M.; Dal, T.; Kalaycioglu, A. T.

Submission details

Submission ID
OQ935539.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-10-29 17:10:51 UTC
Date released
2024-10-29 17:15:40 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Karadeniz Technical University, Faculty of Pharmacy

Alignment states and QC metrics M

Completeness M
16.47%
Length M
884
Total ambiguous nucs M
0
Total deleted nucs M
0
Total frame shifts M
0
Total inserted nucs M
0
Total SNPs M
145
Total unknown nucs M
0

Sample details

Collection country
Turkey
Collection date
2021
Collection date (lower bound)
2021-01-01
Collection date (upper bound)
2021-12-31
Isolate name
TR-SIVAS-C15M-2021

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession M
OQ935539.1
NCBI release date
2023-08-15

Nucleotide mutations

Substitutions

M

  • M:C1631A
  • M:A1640G
  • M:G1642A
  • M:T1644C
  • M:G1646A
  • M:T1649G
  • M:A1652C
  • M:A1658G
  • M:C1661A
  • M:A1662G
  • M:T1673C
  • M:A1688G
  • M:A1694G
  • M:G1703A
  • M:T1706A
  • M:C1715T
  • M:C1718T
  • M:G1720A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    GPC

  • GPC:R517K
  • GPC:S524G
  • GPC:G543D
  • GPC:R579K
  • GPC:N592T
  • GPC:V598T
  • GPC:Y606F
  • GPC:R609K
  • GPC:A630V
  • GPC:T633S
  • GPC:I637V
  • GPC:K669H
  • GPC:I670V
  • GPC:K675R
  • GPC:K688R
  • GPC:L707F
  • GPC:I711L
  • GPC:V718I
    • Deletions
    None
    Insertions
    None