PP_000RADF.2

Display Name: Turkey/PP_000RADF.2/2021-01-01
Zarrabi Ahrabi, S.; Akyildiz, G.; Gargili Keles, A.

Submission details

Submission ID
OQ377561.1.S
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-09-26 15:01:57 UTC
Date released
2024-09-26 15:20:44 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Marmara University, Faculty of Health Sciences/Basic Health Sciences Department

Alignment states and QC metrics S

Completeness S
12.80%
Length S
214
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
42
Total unknown nucs S
0

Sample details

Collection subdivision level 1
Istanbul
Collection country
Turkey
Collection date
2021
Collection date (lower bound)
2021-01-01
Collection date (upper bound)
2021-12-31
Isolate name
SZAMU-78

Host

Host name scientific
Ixodes sp.
Host taxon id
2759147

INSDC

INSDC accession S
OQ377561.1
NCBI release date
2023-06-27

Nucleotide mutations

Substitutions

S

  • S:G259T
  • S:G262A
  • S:A268C
  • S:T274C
  • S:T283C
  • S:G292A
  • S:C295T
  • S:A298T
  • S:T304C
  • S:C310T
  • S:T313C
  • S:G314A
  • S:A322G
  • S:A325G
  • S:G328A
  • S:A337G
  • S:A349G
  • S:G353T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    NP

  • NP:G87S
  • NP:A100S
  • NP:S109D
  • NP:T111A
  • NP:T124A
  • NP:G125N
  • NP:F139L
    • Deletions
    None
    Insertions
    None