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Status
PP_000RABK.2
All versions
PP_000RABK.1
(Revised)
PP_000RABK.2
(Latest version)
Download FASTA
Display Name: Turkey/PP_000RABK.2/2021-01-01
S. Zarrabi Ahrabi,
G. Akyildiz,
A. Gargili Keles
Submission details
Submission ID
OQ377559.1.S
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-09-26 15:01:57 UTC
Date released
2024-09-26 15:20:44 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-08-27 12:11
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Marmara University, Faculty of Health Sciences/Basic Health Sciences Department
Alignment states and QC metrics S
Completeness S
12.74%
Length S
213
Total ambiguous nucs S
0
Total deleted nucs S
0
Total frame shifts S
0
Total inserted nucs S
0
Total SNPs S
40
Total unknown nucs S
0
Sample details
Collection subdivision level 1
Istanbul
Collection country
Turkey
Collection date
2021-01-01
Isolate name
SZAMU-69
Host
Host name scientific
Haemaphysalis
Host taxon id
34622
INSDC
INSDC accession S
OQ377559.1
NCBI release date
2023-06-27
Nucleotide mutations
Substitutions
S
S:
G
262
A
S:
A
268
C
S:
G
271
A
S:
T
274
C
S:
T
283
C
S:
G
292
A
S:
C
295
T
S:
A
298
T
S:
T
304
C
S:
C
310
T
S:
T
313
C
S:
A
322
G
S:
A
325
G
S:
G
328
A
S:
A
337
G
S:
A
349
G
S:
G
353
T
S:
T
364
C
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Deletions
None
Insertions
None
Amino acid mutations
Substitutions
NP
NP:
A
100
S
NP:
S
109
N
NP:
T
111
A
NP:
T
124
A
NP:
G
125
N
NP:
F
139
L
Deletions
None
Insertions
None
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