PP_000RABK.2

Display Name: Turkey/PP_000RABK.2/2021
S. Zarrabi Ahrabi, G. Akyildiz & A. Gargili Keles

Sample details

Collection date
2021
Country
Turkey
Admin level 1
Istanbul
Isolate name
SZAMU-69

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Marmara University, Faculty of Health Sciences/Basic Health Sciences Department

INSDC

INSDC accession S
NCBI release date
2023-06-27

Host

Host taxon ID
Host name - scientific
Haemaphysalis

Alignment and QC metrics S

Length S
213
Completeness S
12.74%
# of SNPs S
40
# of inserted bases S
0
# of deleted bases S
0
# of ambiguous bases S
0
# of unknown bases S
0
# of frame shifts S
0
# of stop codons S
0

Submission details

Submission ID
OQ377559.1.S
Submitting group
Date submitted
2024-09-26 15:01:57 UTC
Date released
2024-09-26 15:20:44 UTC
Earliest release date
2023-06-27

Lineage

Segment S Lineage
V

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:G262A
  • S:A268C
  • S:G271A
  • S:T274C
  • S:T283C
  • S:G292A
  • S:C295T
  • S:A298T
  • S:T304C
  • S:C310T
  • S:T313C
  • S:A322G
  • S:A325G
  • S:G328A
  • S:A337G
  • S:A349G
  • S:G353T
  • S:T364C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
  • NP:F139L
    • Deletions
    None
    Insertions
    None

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