PP_000R9FC.4

Display Name: Turkey/PP_000R9FC.4/2021
S. Zarrabi Ahrabi, G. Akyildiz & A. Gargili Keles

Sample details

Collection date
2021
Country
Turkey
Admin level 1
Istanbul
Isolate name
SZAMU-80

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Marmara University, Faculty of Health Sciences/Basic Health Sciences Department

INSDC

INSDC accession S
NCBI release date
2023-04-05

Host

Host taxon ID
Host name - scientific
Ixodes sp.

Alignment and QC metrics S

Length S
176
Completeness S
10.53%
# of SNPs S
36
# of inserted bases S
0
# of deleted bases S
0
# of ambiguous bases S
0
# of unknown bases S
0
# of frame shifts S
0
# of stop codons S
0

Submission details

Submission ID
OP312072.1.S
Submitting group
Date submitted
2025-05-28 12:35:18 UTC
Date released
2025-05-28 12:35:51 UTC
Earliest release date
2023-04-05

Lineage

Segment S Lineage
V

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

S

  • S:G292A
  • S:C295T
  • S:A298T
  • S:T304C
  • S:A305G
  • S:G306A
  • S:C310T
  • S:T313C
  • S:A322G
  • S:A325G
  • S:G328A
  • S:A337G
  • S:A349G
  • S:G353T
  • S:T364C
  • S:G367A
  • S:A379G
  • S:G381A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:S84D
  • NP:A100S
  • NP:S109N
  • NP:T111A
  • NP:T124A
  • NP:G125N
    • Deletions
    None
    Insertions
    None

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