PP_000R99Q.3

Display Name: Turkey/PP_000R99Q.3/2021-01-01
Kalaycioglu, A. T.; Oguzoglu, T. C.; Ari, O.; Durmaz, R.; Engin, A.; Bakir, M.; Erdem, E.

Submission details

Submission ID
ON668034.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-10-29 17:10:51 UTC
Date released
2024-10-29 17:15:40 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Bay, Faculty of Pharmacy Department of Pharmaceutical Microbiology

Alignment states and QC metrics M

Completeness M
100.00%
Frame shifts M
GPC:78(nt:322-323)
Length M
5364
Total ambiguous nucs M
0
Total deleted nucs M
16
Total frame shifts M
1
Total inserted nucs M
14
Total SNPs M
1030
Total unknown nucs M
0

Sample details

Collection country
Turkey
Collection date
2021-01-01
Isolate name
TR-SIVAS-C6M-2021

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession M
ON668034.1
NCBI release date
2023-02-22

Nucleotide mutations

Substitutions

M

  • M:T40A
  • M:G50A
  • M:A51G
  • M:T67C
  • M:T68C
  • M:A69G
  • M:T71A
  • M:G76C
  • M:A80G
  • M:T83C
  • M:G84A
  • M:T86C
  • M:C92T
  • M:T100C
  • M:T102C
  • M:C103T
  • M:A108G
  • M:A112G
    • Deletions
    M:167-169, M:318-321, M:5169-5171, M:5177-5182
    Insertions
    ins_M:5200:GGGCCCTGGC, ins_M:158:CAG, ins_M:323:G

    Amino acid mutations

    Substitutions

    GPC

  • GPC:I3T
  • GPC:S4L
  • GPC:M6V
  • GPC:Y7C
  • GPC:A8F
  • GPC:C11Y
  • GPC:C15L
  • GPC:G16C
  • GPC:E19G
  • GPC:T20A
  • GPC:S23Q
  • GPC:H24L
  • GPC:E26T
  • GPC:R28E
  • GPC:K31G
  • GPC:D33N
  • GPC:T34N
  • GPC:M35T
    • Deletions
    GPC:76, GPC:77
    Insertions
    None