PP_000R95Y.3

Display Name: Turkey/PP_000R95Y.3/2021-01-01
Kalaycioglu, A. T.; Oguzoglu, T. C.; Ari, O.; Durmaz, R.; Engin, A.; Bakir, M.; Erdem, E.; Dal, T.

Submission details

Submission ID
ON640908.1.L
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-10-29 17:10:51 UTC
Date released
2024-10-29 17:15:40 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Karadeniz Technical University, Faculty of Pharmacy Department of Pharmaceutical Microbiology

Alignment and QC metrics L

Completeness L
69.62%
Length L
8430
Total ambiguous nucs L
0
Total deleted nucs L
0
Total frame shifts L
0
Total inserted nucs L
0
Total SNPs L
873
Total unknown nucs L
0

Sample details

Earliest release date
2023-02-21
Collection country
Turkey
Collection date
2021
Collection date (lower bound)
2021-01-01
Collection date (upper bound)
2021-12-31
Isolate name
TR-SIVAS-C18F-2021

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession L
ON640908.1
NCBI release date
2023-02-21

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:T3505C
  • L:G3523A
  • L:T3529C
  • L:T3565G
  • L:G3568A
  • L:C3571T
  • L:C3572T
  • L:A3583G
  • L:C3586T
  • L:C3595T
  • L:T3607C
  • L:T3625C
  • L:T3646C
  • L:G3652A
  • L:G3676A
  • L:A3679G
  • L:A3685T
  • L:G3711A
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    RdRp

  • RdRp:D1163E
  • RdRp:R1212K
  • RdRp:G1214S
  • RdRp:V1228I
  • RdRp:E1269V
  • RdRp:K1272R
  • RdRp:V1317I
  • RdRp:N1367D
  • RdRp:L1386I
  • RdRp:S1436N
  • RdRp:S1454A
  • RdRp:R1456K
  • RdRp:I1458L
  • RdRp:R1478K
  • RdRp:V1495I
  • RdRp:V1577I
  • RdRp:V1601I
  • RdRp:K1656R
    • Deletions
    None
    Insertions
    None

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