PP_000R932.2

Turkey/PP_000R932.2/2021
A. T. Kalaycioglu, T. C. Oguzoglu, O. Ari, R. Durmaz, A. Engin, M. Bakir, E. Erdem & T. Dal

Karadeniz Technical University, Faculty of Pharmacy Department of Pharmaceutical Microbiology

Sample details

Collection date
2021
Sampling location
Turkey
Isolate name
TR-SIVAS-C13F-2021

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL

INSDC

INSDC accession L
NCBI release date
2023-02-21

Host

Host

Submission details

Submission ID
ON640906.1.L
Submitting group
Date submitted
2024-09-26 15:01:57 UTC
Date released
2024-09-26 15:19:14 UTC
Earliest release date
2023-02-21

Alignment and QC

Length L
8429 (69.6%)
# of SNPs L
875

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • G3523A
  • T3529C
  • G3568A
  • C3571T
  • C3572T
  • C3586T
  • T3589G
  • C3595T
  • T3607C
  • G3613A
  • G3628A
  • A3630G
  • T3646C
  • G3652A
  • G3675A
  • A3679G
  • A3685T
  • G3711A
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

RdRp

  • RdRp:D1171E
  • RdRp:K1185R
  • RdRp:R1200K
  • RdRp:R1212K
  • RdRp:V1228I
  • RdRp:V1241L
  • RdRp:K1282M
  • RdRp:V1317I
  • RdRp:T1351K
  • RdRp:I1363V
  • RdRp:N1367D
  • RdRp:L1386I
  • RdRp:R1427S
  • RdRp:S1436N
  • RdRp:N1445S
  • RdRp:S1454V
  • RdRp:R1456K
  • RdRp:I1458L
Deletions
N/A
Insertions
N/A

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