PP_000R908.3

Display Name: Turkey/PP_000R908.3/2021
A. T. Kalaycioglu, T. C. Oguzoglu, O. Ari, R. Durmaz, A. Engin, M. Bakir & E. Erdem

Submission details

Submission ID
ON623085.1.M
Submitting group
Date submitted
2024-10-29 17:10:51 UTC
Date released
2024-10-29 17:15:40 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Karadeniz Technical University, Faculty of Pharmacy Department of Pharmaceutical Microbiology

Alignment and QC metrics M

Completeness M
100.00%
Length M
5364
Total ambiguous nucs M
0
Total deleted nucs M
28
Total frame shifts M
0
Total inserted nucs M
26
Total SNPs M
1012
Total unknown nucs M
0

Sample details

Earliest release date
2023-02-20
Collection country
Turkey
Collection date
2021
Collection date (lower bound)
2021-01-01
Collection date (upper bound)
2021-12-31
Isolate name
TR-SIVAS-C21F-2021

Host

Host name - scientific
Homo sapiens
Host taxon ID

INSDC

INSDC accession M
NCBI release date
2023-02-20

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • M:T40A
  • M:G50A
  • M:A51G
  • M:T67C
  • M:T68C
  • M:A69G
  • M:T71A
  • M:G76C
  • M:A80G
  • M:G84A
  • M:T86C
  • M:A88G
  • M:C92T
  • M:T94C
  • M:T100C
  • M:T102C
  • M:C103T
  • M:A108G
    • Deletions
    M:165-167, M:327-329, M:593-595, M:5172, M:5173, M:5180, M:5181, M:5187-5191, M:5238, M:5246-5250, M:5277-5280
    Insertions
    ins_M:599:ATA, ins_M:5194:CGTCTAG, ins_M:5286:TAAG, ins_M:5202:CTT, ins_M:5231:TTACAG, ins_M:158:CAG

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:M1T
  • GPC:I3T
  • GPC:S4L
  • GPC:M6V
  • GPC:Y7C
  • GPC:A8F
  • GPC:C11Y
  • GPC:C15L
  • GPC:L17R
  • GPC:E19G
  • GPC:T20A
  • GPC:S23Q
  • GPC:H24S
  • GPC:E26A
  • GPC:R28E
  • GPC:K31G
  • GPC:D33N
  • GPC:M35T
    • Deletions
    GPC:90
    Insertions
    None

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