PP_000R908.3

Display Name: Turkey/PP_000R908.3/2021
A. T. Kalaycioglu, T. C. Oguzoglu, O. Ari, R. Durmaz, A. Engin, M. Bakir & E. Erdem

Sample details

Collection date
2021
Country
Turkey
Isolate name
TR-SIVAS-C21F-2021

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Karadeniz Technical University, Faculty of Pharmacy Department of Pharmaceutical Microbiology

INSDC

INSDC accession M
NCBI release date
2023-02-20

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics M

Length M
5364
Completeness M
100.00%
# of SNPs M
1054
# of inserted bases M
1
# of deleted bases M
3
# of ambiguous bases M
0
# of unknown bases M
0
# of frame shifts M
0
# of stop codons M
0

Submission details

Submission ID
ON623085.1.M
Submitting group
Date submitted
2024-10-29 17:10:51 UTC
Date released
2024-10-29 17:15:40 UTC
Earliest release date
2023-02-20

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

M

  • M:T40A
  • M:G50A
  • M:A51G
  • M:T67C
  • M:T68C
  • M:A69G
  • M:T71A
  • M:G76C
  • M:A80G
  • M:G84A
  • M:T86C
  • M:A88G
  • M:C92T
  • M:T94C
  • M:T100C
  • M:T102C
  • M:C103T
  • M:A108G
    • Deletions
    M:327-329
    Insertions
    ins_M:5175:A

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    GPC

  • GPC:M1T
  • GPC:I3T
  • GPC:S4L
  • GPC:M6V
  • GPC:Y7C
  • GPC:A8F
  • GPC:C11Y
  • GPC:C15L
  • GPC:L17R
  • GPC:E19G
  • GPC:T20A
  • GPC:S23Q
  • GPC:H24S
  • GPC:E26A
  • GPC:R28E
  • GPC:K31G
  • GPC:D33N
  • GPC:M35T
    • Deletions
    GPC:90
    Insertions
    None

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