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PP_000R8XE.3
All versions
PP_000R8XE.1
(Revised)
PP_000R8XE.2
(Revised)
PP_000R8XE.3
(Latest version)
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Download FASTA
Download metadata TSV
Display Name: Turkey/PP_000R8XE.3/2021-01-01
Kalaycioglu,
A. T.; Oguzoglu,
T. C.; Ari,
O.; Durmaz,
R.; Engin,
A.; Bakir,
M.; Erdem,
E.
Submission details
Submission ID
ON623088.1.L/ON623082.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-10-29 17:10:51 UTC
Date released
2024-10-29 17:15:40 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-08-27 12:11
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Karadeniz Technical University, Faculty of Pharmacy Department of Pharmaceutical Microbiology
Alignment states and QC metrics L
Completeness L
69.62%
Length L
8430
Total ambiguous nucs L
0
Total deleted nucs L
0
Total frame shifts L
0
Total inserted nucs L
0
Total SNPs L
876
Total unknown nucs L
1
Alignment states and QC metrics M
Completeness M
99.96%
Length M
5362
Total ambiguous nucs M
0
Total deleted nucs M
28
Total frame shifts M
0
Total inserted nucs M
26
Total SNPs M
1020
Total unknown nucs M
0
Sample details
Collection country
Turkey
Collection date
2021-01-01
Isolate name
TR-SIVAS-C5F-2021
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession L
ON623088.1
INSDC accession M
ON623082.1
NCBI release date
2023-02-20
Nucleotide mutations
Substitutions
L
L:
T
3505
C
L:
G
3523
A
L:
T
3529
C
L:
G
3568
A
L:
C
3571
T
L:
C
3572
T
L:
A
3583
G
L:
C
3586
T
L:
T
3589
G
L:
C
3595
T
L:
T
3607
C
L:
G
3627
A
L:
G
3628
A
L:
A
3630
G
L:
T
3646
C
L:
G
3652
A
L:
G
3676
A
L:
A
3679
G
Show more
M
M:
T
40
A
M:
G
50
A
M:
A
51
G
M:
T
67
C
M:
T
68
C
M:
A
69
G
M:
T
71
A
M:
G
76
C
M:
A
80
G
M:
G
84
A
M:
T
86
C
M:
A
88
G
M:
C
92
T
M:
T
94
C
M:
T
100
C
M:
T
102
C
M:
C
103
T
M:
A
108
G
Show more
Deletions
M:165-167, M:327-329, M:593-595, M:5172, M:5173, M:5180, M:5181, M:5187-5191, M:5238, M:5246-5250, M:5277-5280
Insertions
ins_M:5202:CTT, ins_M:599:ATA, ins_M:158:CAG, ins_M:5231:TTACAG, ins_M:5286:TAAG, ins_M:5194:CGTCTAG
Amino acid mutations
Substitutions
GPC
GPC:
M
1
T
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
A
8
F
GPC:
C
11
Y
GPC:
C
15
L
GPC:
L
17
R
GPC:
E
19
G
GPC:
T
20
A
GPC:
S
23
Q
GPC:
H
24
S
GPC:
E
26
A
GPC:
R
28
E
GPC:
K
31
G
GPC:
D
33
N
GPC:
M
35
T
Show more
RdRp
RdRp:
D
1171
E
RdRp:
R
1184
K
RdRp:
K
1185
R
RdRp:
R
1212
K
RdRp:
V
1228
I
RdRp:
K
1282
M
RdRp:
V
1317
I
RdRp:
I
1363
V
RdRp:
N
1367
D
RdRp:
L
1386
I
RdRp:
S
1436
N
RdRp:
M
1448
L
RdRp:
S
1454
A
RdRp:
R
1456
K
RdRp:
I
1458
L
RdRp:
R
1478
K
RdRp:
V
1495
I
RdRp:
V
1577
I
Show more
Deletions
GPC:90
Insertions
None
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