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PP_000R8WG.3
Version 3
PP_000R8WG.1
Previous version
PP_000R8WG.2
Previous version
PP_000R8WG.3
Latest version
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Download FASTA
Download metadata TSV
Turkey/TR-GIRESUN-C4M-2021/2021
A. T. Kalaycioglu,
T. C. Oguzoglu,
O. Ari,
R. Durmaz,
A. Engin,
M. Bakir &
E. Erdem
Karadeniz Technical University, Faculty of Pharmacy Department of Pharmaceutical Microbiology
Sample details
Collection date
2021
Sampling location
Turkey
Isolate name
TR-GIRESUN-C4M-2021
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
INSDC
INSDC accession L
ON623087.1
INSDC accession M
ON623081.1
NCBI release date
2023-02-20
Host
Host
human (Homo sapiens)
Submission details
Submission ID
ON623087.1.L/ON623081.1.M
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-10-29 17:10:51 UTC
Date released
2024-10-29 17:15:40 UTC
Earliest release date
2023-02-20
Alignment and QC
Length L
8422 (69.6%)
# of SNPs L
883
Length M
5364 (100%)
# of SNPs M
1047
# of inserted bases M
1
# of deleted bases M
3
Nucleotide mutations
Mutations called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
L
T
3505
C
G
3523
A
T
3529
C
T
3565
G
G
3568
A
A
3570
C
C
3571
T
C
3572
T
A
3583
G
C
3586
T
C
3595
T
T
3607
C
T
3625
C
T
3646
C
G
3652
A
A
3653
T
A
3654
C
G
3676
A
Show more
M
T
40
A
G
50
A
A
51
G
T
67
C
T
68
C
A
69
G
T
71
A
G
76
C
A
80
G
T
83
C
G
84
A
C
92
T
T
100
C
T
102
C
C
103
T
A
108
G
A
112
G
T
113
C
Show more
Deletions
M
321-323
Insertions
M
ins_5171:T
Amino acid substitutions
Substitutions called relative to the
NC_005301.3
,
NC_005300.2
&
NC_005302.1
references
Substitutions
GPC
GPC:
I
3
T
GPC:
S
4
L
GPC:
M
6
V
GPC:
Y
7
C
GPC:
A
8
F
GPC:
C
11
Y
GPC:
C
15
L
GPC:
G
16
C
GPC:
E
19
G
GPC:
T
20
A
GPC:
S
23
Q
GPC:
H
24
L
GPC:
E
26
T
GPC:
R
28
E
GPC:
K
31
G
GPC:
D
33
N
GPC:
T
34
N
GPC:
M
35
T
Show more
RdRp
RdRp:
D
1163
E
RdRp:
N
1165
T
RdRp:
K
1193
S
RdRp:
R
1212
K
RdRp:
G
1214
S
RdRp:
V
1228
I
RdRp:
V
1317
I
RdRp:
N
1367
D
RdRp:
L
1386
I
RdRp:
S
1436
N
RdRp:
S
1454
A
RdRp:
R
1456
K
RdRp:
I
1458
L
RdRp:
R
1478
K
RdRp:
V
1495
I
RdRp:
V
1577
I
RdRp:
V
1601
I
RdRp:
T
1658
A
Show more
Deletions
GPC
GPC:77
Insertions
N/A
Nucleotide sequences
Aligned nucleotide sequences
Aligned amino acid sequences
L
M
S
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