REVOKED

PP_000QFTH.1

Display Name: India/PP_000QFTH.1/2013
P. D. Yadav, A. M. Shete & D. T. Mourya

Sample details

Collection date
2013
Country
India
Admin level 2
Asia
Isolate name
Amreli

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-08-27 12:11insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
National Institute of Virology, Maximum Containment Laboratory

INSDC

INSDC accession L
INSDC accession S
NCBI release date
2017-09-06

Alignment and QC metrics L

Length L
1118
Completeness L
9.23%
# of SNPs L
146
# of inserted bases L
0
# of deleted bases L
0
# of ambiguous bases L
0
# of unknown bases L
0
# of frame shifts L
0
# of stop codons L
0

Alignment and QC metrics S

Length S
1447
Completeness S
86.54%
# of SNPs S
183
# of inserted bases S
0
# of deleted bases S
0
# of ambiguous bases S
0
# of unknown bases S
0
# of frame shifts S
0
# of stop codons S
0

Submission details

Submission ID
KT384388.1.L/KT384397.1.S
Submitting group
Date submitted
2024-08-27 12:10:45 UTC
Date released
2024-08-27 12:12:59 UTC
Earliest release date
2017-09-06

Lineage

Segment S Lineage
IV.2

Nucleotide mutations

Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

Substitutions

L

  • L:G6160A
  • L:G6163A
  • L:A6171G
  • L:C6173A
  • L:G6175T
  • L:T6176A
  • L:C6177T
  • L:A6178C
  • L:G6181A
  • L:C6182G
  • L:T6183C
  • L:A6190G
  • L:A6192G
  • L:G6193A
  • L:C6194G
  • L:A6195C
  • L:C6196A
  • L:T6199C

    • S

  • S:A61G
  • S:C64T
  • S:G67A
  • S:T79C
  • S:G99A
  • S:A118G
  • S:C142T
  • S:T157C
  • S:C166T
  • S:C178A
  • S:T182C
  • S:G190A
  • S:G196A
  • S:C214T
  • S:C217T
  • S:G229A
  • S:C235T
  • S:C238T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_005301.3, NC_005300.2 & NC_005302.1 references

    Substitutions

    NP

  • NP:R15K
  • NP:D116E
  • NP:T124A
  • NP:G125N
  • NP:N150H
  • NP:H195R
  • NP:D199E
  • NP:I246V
  • NP:R270K
  • NP:S275N
  • NP:S301G
  • NP:K354R
  • NP:V436I

    • RdRp

  • RdRp:E2032G
  • RdRp:L2033I
  • RdRp:S2034I
  • RdRp:L2036A
  • RdRp:E2039G
  • RdRp:H2040A
  • RdRp:V2074I
  • RdRp:K2110R
  • RdRp:V2123I
  • RdRp:Q2127R
  • RdRp:K2128R
  • RdRp:I2134T
  • RdRp:V2148A
  • RdRp:S2197G
  • RdRp:A2330T
    • Deletions
    None
    Insertions
    None

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