PP_000PMLT.2

Display Name: Democratic_Republic_of_the_Congo/PP_000PMLT.2/2020-08-19
E. Kinganda-Lusamaki, S. Whitmer, E. Lokilo-Lofiko, A. Amuri-Aziza, F. Muyembe-Mawete, J. C. Makangara-Cigolo, G. Makaya, F. Mbuyi, A. Whitesell, R. Kallay, M. Choi, C. Pratt, D. Mukadi-Bamuleka, H. Kavunga-Membo, M. Matondo-Kuamfumu, F. Mambu-Mbika, R. Ekila-Ifinji, T. Shoemaker, M. Stewart, J. Eng, A. Rajan, G. N. Soke, P. N. Fonjungo, J. O. Otshudiema, ..., P. Mbala

Sample details

Collection date
2020-08-19
Collection date (lower bound)
2020-08-19
Collection date (upper bound)
2020-08-19
Isolate name
Ebolavirus/H.sapiens-wt/COD/2020/Mbandaka-RDCEQT002143
Collection country
Democratic Republic of the Congo

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-08-27 12:08insdc_ingest_userOPEN
Data use terms URL

Authors

Author affiliations
Centers for Disease Control and Prevention, Viral Special Pathogens Branch

INSDC

NCBI release date
2024-03-11
NCBI update date
2024-03-11
INSDC accession

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
18532
Total SNPs
251
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
8
Total frame shifts
0
Completeness
97.71%

Submission details

Submission ID
OR084931.1
Submitting group
Date submitted
2024-09-26 15:01:59 UTC
Date released
2024-09-26 15:18:48 UTC
Earliest release date
2024-03-11

Nucleotide mutations

Mutations called relative to the NC_002549.1 reference

Substitutions

  • G360T
  • G381A
  • A388G
  • A491G
  • G500A
  • A619G
  • A622G
  • C856T
  • C1094T
  • T1156C
  • C1198T
  • G1420A
  • T1540C
  • A1687G
  • T1916C
  • C1945T
  • G1996A
  • T2019C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_002549.1 reference

    Substitutions

    GP

  • GP:V310A
  • GP:G314R
  • GP:L378P
  • GP:A417T
  • GP:S422P
  • GP:P430L
  • GP:S440G
  • GP:F443L
  • GP:S475G
  • GP:S476G
  • GP:I544T

    • L

  • L:V79I
  • L:E130D
  • L:P342S
  • L:I1183L
  • L:S1383N
  • L:R1405Q
  • L:A1517V
  • L:F1610P
  • L:S1720C
  • L:F1742S
  • L:S1747T
  • L:D1888N
  • L:E2051D

    • NP

  • NP:I8V
  • NP:A11T
  • NP:I517T
  • NP:I527T
  • NP:T536A
  • NP:A540T
  • NP:T557I
  • NP:S644P

    • VP24

  • VP24:M212K

    • VP35

  • VP35:D18N
  • VP35:N204D

    • VP40

  • VP40:A202V
    • Deletions
    None
    Insertions
    None

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