PP_000PKX7.3

Democratic_Republic_of_the_Congo/PP_000PKX7.3/2020-07-14
E. Kinganda-Lusamaki, S. Whitmer, E. Lokilo-Lofiko, A. Amuri-Aziza, F. Muyembe-Mawete, J. C. Makangara-Cigolo, G. Makaya, F. Mbuyi, A. Whitesell, R. Kallay, M. Choi, C. Pratt, D. Mukadi-Bamuleka, H. Kavunga-Membo, M. Matondo-Kuamfumu, F. Mambu-Mbika, R. Ekila-Ifinji, T. Shoemaker, M. Stewart, J. Eng, A. Rajan, G. N. Soke, P. N. Fonjungo, J. O. Otshudiema, ..., P. Mbala

Centers for Disease Control and Prevention, Viral Special Pathogens Branch

Sample details

Collection date
2020-07-14
Sampling location
Democratic Republic of the Congo
Isolate name
Ebolavirus/H.sapiens-wt/COD/2020/Mbandaka-RDCEQT002111

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-08-27 12:08insdc_ingest_userOPEN
Data use terms URL

Outbreak

Outbreak
Ebov-2020

INSDC

INSDC accession
NCBI release date
2024-03-11
NCBI update date
2024-03-11

Host

Host

Submission details

Submission ID
OR084875.1
Submitting group
Date submitted
2024-10-29 17:09:58 UTC
Date released
2024-10-29 17:15:12 UTC
Earliest release date
2024-03-11

Alignment and QC

Length
18832 (97.9%)
# of SNPs
253
# of unknown bases
266

Nucleotide mutations

Mutations called relative to the NC_002549.1 reference

Substitutions

  • T160C
  • C180T
  • C230T
  • C280T
  • G360T
  • G381A
  • A388G
  • A491G
  • G500A
  • A619G
  • A622G
  • C856T
  • C1094T
  • T1156C
  • C1198T
  • G1420A
  • T1540C
  • A1687G
Deletions
N/A
Insertions
N/A

Amino acid mutations

Mutations called relative to the NC_002549.1 reference

Substitutions

GP

  • GP:V310A
  • GP:G314R
  • GP:S377P
  • GP:L378P
  • GP:A417T
  • GP:S422P
  • GP:P430L
  • GP:S440G
  • GP:F443L
  • GP:S475G
  • GP:S476G
  • GP:I544T

L

  • L:V79I
  • L:E130D
  • L:P342S
  • L:I1183L
  • L:S1383N
  • L:R1405Q
  • L:A1517V
  • L:F1610P
  • L:S1720C
  • L:F1742S
  • L:S1747T
  • L:D1888N
  • L:E2051D

NP

  • NP:I8V
  • NP:A11T
  • NP:I517T
  • NP:I527T
  • NP:T536A
  • NP:A540T
  • NP:T557I
  • NP:S644P

VP24

  • VP24:M212K

VP35

  • VP35:D18N
  • VP35:N204D

VP40

  • VP40:A202V
Deletions
N/A
Insertions
N/A

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