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Status
PP_000PKH1.3
All versions
PP_000PKH1.1
(Revised)
PP_000PKH1.2
(Revised)
PP_000PKH1.3
(Latest version)
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Display Name: Democratic_Republic_of_the_Congo/PP_000PKH1.3/2020-07-03
Kinganda-Lusamaki,
E.; Whitmer,
S.; Lokilo-Lofiko,
E.; Amuri-Aziza,
A.; Muyembe-Mawete,
F.; Makangara-Cigolo,
J. C.; Makaya,
G.; Mbuyi,
F.; Whitesell,
A.; Kallay,
R.; Choi,
M.; Pratt,
C.; Mukadi-Bamuleka,
D.; Kavunga-Membo,
H.; Matondo-Kuamfumu,
M.; Mambu-Mbika,
F.; Ekila-Ifinji,
R.; Shoemaker,
T.; Stewart,
M.; Eng,
J.; Rajan,
A.; Soke,
G. N.; Fonjungo,
P. N.; Otshudiema,
...,
P.
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Submission details
Submission ID
OR084864.1
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-10-29 17:09:58 UTC
Date released
2024-10-29 17:15:12 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-08-27 12:08
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Centers for Disease Control and Prevention, Viral Special Pathogens Branch
Alignment states and QC metrics
Completeness
93.32%
Length
18532
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
239
Total unknown nucs
839
Sample details
Collection country
Democratic Republic of the Congo
Collection date
2020-07-03
Isolate name
Ebolavirus/H.sapiens-wt/COD/2020/Mbandaka-RDCEQT000492
Host
Host name scientific
Homo sapiens
Host taxon id
9606
INSDC
INSDC accession
OR084864.1
NCBI release date
2024-03-11
NCBI update date
2024-03-11
Nucleotide mutations
Substitutions
G
360
T
G
381
A
A
388
G
A
491
G
G
500
A
A
619
G
A
622
G
C
856
T
C
1094
T
T
1156
C
C
1198
T
G
1420
A
T
1540
C
A
1687
G
T
1916
C
C
1945
T
G
1996
A
T
2019
C
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Deletions
None
Insertions
None
Amino acid mutations
Substitutions
GP
GP:
V
310
A
GP:
G
314
R
GP:
S
377
P
GP:
L
378
P
GP:
A
417
T
GP:
S
422
P
GP:
P
430
L
GP:
S
440
G
GP:
F
443
L
GP:
S
475
G
GP:
S
476
G
GP:
I
544
T
L
L:
V
79
I
L:
E
130
D
L:
P
342
S
L:
S
1383
N
L:
R
1405
Q
L:
A
1517
V
L:
S
1720
C
L:
F
1742
S
L:
S
1747
T
L:
D
1888
N
L:
E
2051
D
NP
NP:
I
8
V
NP:
A
11
T
NP:
I
517
T
NP:
I
527
T
NP:
T
536
A
NP:
A
540
T
NP:
T
557
I
NP:
S
644
P
VP24
VP24:
M
212
K
VP35
VP35:
D
18
N
VP35:
N
204
D
VP40
VP40:
A
202
V
Deletions
None
Insertions
None
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