PP_000PJVC.2

Display Name: Democratic_Republic_of_the_Congo/PP_000PJVC.2/2020-06-12
Kinganda-Lusamaki, E.; Whitmer, S.; Lokilo-Lofiko, E.; Amuri-Aziza, A.; Muyembe-Mawete, F.; Makangara-Cigolo, J. C.; Makaya, G.; Mbuyi, F.; Whitesell, A.; Kallay, R.; Choi, M.; Pratt, C.; Mukadi-Bamuleka, D.; Kavunga-Membo, H.; Matondo-Kuamfumu, M.; Mambu-Mbika, F.; Ekila-Ifinji, R.; Shoemaker, T.; Stewart, M.; Eng, J.; Rajan, A.; Soke, G. N.; Fonjungo, P. N.; Otshudiema, ..., P.

Submission details

Submission ID
OR084846.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-09-26 15:01:59 UTC
Date released
2024-09-26 15:18:48 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 12:08insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Centers for Disease Control and Prevention, Viral Special Pathogens Branch

Alignment states and QC metrics

Completeness
95.61%
Length
18810
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
2
Total SNPs
249
Total unknown nucs
682

Sample details

Collection country
Democratic Republic of the Congo
Collection date
2020-06-12
Isolate name
Ebolavirus/H.sapiens-wt/COD/2020/Tumba-RDCEQT000151

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
OR084846.1
NCBI release date
2024-03-11
NCBI update date
2024-03-11

Nucleotide mutations

Substitutions

  • C180T
  • G181A
  • A187G
  • C230T
  • G381A
  • A388G
  • G413A
  • T463C
  • A491G
  • G500A
  • T542C
  • A619G
  • A622G
  • C646T
  • T763C
  • C1094T
  • T1156C
  • C1198T
    • Deletions
    None
    Insertions
    ins_18619:T, ins_2819:T

    Amino acid mutations

    Substitutions

    GP

  • GP:P126L
  • GP:V310A
  • GP:D338G
  • GP:S377P
  • GP:L378P
  • GP:A417T
  • GP:S422P
  • GP:T424M
  • GP:P430L
  • GP:S440G
  • GP:F443L
  • GP:A474T
  • GP:I544T

    • L

  • L:V79I
  • L:E130D
  • L:L287F
  • L:P507L
  • L:I1183L
  • L:S1383N
  • L:R1405Q
  • L:F1610L
  • L:I1704T
  • L:F1742S
  • L:H1745Y
  • L:I1757T
  • L:D1888N
  • L:C2050Y
  • L:E2051D

    • NP

  • NP:I8V
  • NP:A11T
  • NP:S598P
  • NP:S644P

    • VP24

  • VP24:A99V
  • VP24:M212K

    • VP30

  • VP30:A131V

    • VP35

  • VP35:N204D

    • sGP

  • sGP:P126L
  • sGP:T338A

    • ssGP

  • ssGP:P126L
    • Deletions
    None
    Insertions
    None