PP_000LEQY.4

Display Name: Republic_of_the_Congo/PP_000LEQY.4/2003
C. Y. Chiu, S. N. Naccache, J. N. Fair, B. S. Schneider & G. Grard

Sample details

Collection date
2003
Country
Republic of the Congo
Isolate name
Kelle 2

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-08-27 12:08insdc_ingest_userOPEN
Data use terms URL

Outbreak

Outbreak
Ebov-2003

Authors

Author affiliations
University of California, San Francisco, Laboratory Medicine

INSDC

INSDC accession
NCBI release date
2015-03-17
NCBI update date
2015-03-17

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
18656
Completeness
98.40%
# of SNPs
416
# of inserted bases
1
# of deleted bases
0
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
1
Stop Codons
L:555

Submission details

Submission ID
KF113529.1
Version comment
Country changed to Republic of Congo based on isolate name and previously reported outbreak in the districts of Mbomo and Kellé in Cuvette Ouest Region of the Republic of the Congo (https://www.thelancet.com/journals/laninf/article/PIIS1473-3099(03)00584-X).
Submitting group
Date submitted
2025-12-12 17:33:33 UTC
Date released
2025-12-12 17:38:00 UTC
Earliest release date
2015-03-17

Nucleotide mutations

Mutations called relative to the NC_002549.1 reference

Substitutions

  • T72G
  • A169G
  • G188A
  • T197C
  • C230T
  • T288C
  • C298A
  • A310C
  • G360A
  • G371C
  • T377C
  • G381A
  • A388G
  • G407A
  • A434G
  • A491G
  • G500A
  • C511T
    • Deletions
    None
    Insertions
    ins_18619:T

    Amino acid mutations

    Mutations called relative to the NC_002549.1 reference

    Substitutions

    GP

  • GP:V3I
  • GP:T262A
  • GP:V310A
  • GP:N317D
  • GP:G331E
  • GP:N333Y
  • GP:E337G
  • GP:N346D
  • GP:S355N
  • GP:T366I
  • GP:L368F
  • GP:L378P
  • GP:P384Q
  • GP:S422P
  • GP:T435I
  • GP:T441A
  • GP:F443S
  • GP:S475G

    • L

  • L:V79I
  • L:E130D
  • L:I259V
  • L:A345D
  • L:K555*
  • L:Y874H
  • L:F1142V
  • L:S1383N
  • L:I1433T
  • L:V1562I
  • L:Y1594H
  • L:N1708S
  • L:F1742S
  • L:T1832A
  • L:M1872T
  • L:K1919R
  • L:E2051D

    • NP

  • NP:I8V
  • NP:A11T
  • NP:Y87H
  • NP:S502L
  • NP:I517T
  • NP:I527T
  • NP:H534R
  • NP:R550G
  • NP:G596E
  • NP:S644P

    • VP24

  • VP24:K163Q
  • VP24:M212K

    • VP30

  • VP30:S4P
  • VP30:V25G
  • VP30:K57R
  • VP30:E285D

    • VP35

  • VP35:A12V
  • VP35:T68M
  • VP35:N204D

    • VP40

  • VP40:S32N

    • sGP

  • sGP:V3I
  • sGP:T262A
  • sGP:G331R
  • sGP:K337E
  • sGP:V355I

    • ssGP

  • ssGP:V3I
  • ssGP:T262A
    • Deletions
    None
    Insertions
    None

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