PP_000LEP0.3

Display Name: Democratic_Republic_of_the_Congo/PP_000LEP0.3/2003
C. Y. Chiu, S. N. Naccache, J. N. Fair, B. S. Schneider & G. Grard

Sample details

Collection date
2003
Country
Democratic Republic of the Congo
Isolate name
Kelle 1

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-08-27 12:08insdc_ingest_userOPEN
Data use terms URL

Outbreak

Outbreak
Ebov-2003

Authors

Author affiliations
University of California, San Francisco, Laboratory Medicine

INSDC

INSDC accession
NCBI release date
2015-03-17
NCBI update date
2015-03-17

Host

Host taxon ID
Host name - scientific
Homo sapiens

Alignment and QC metrics

Length
18901
Completeness
99.69%
# of SNPs
429
# of inserted bases
1
# of deleted bases
1
# of ambiguous bases
0
# of unknown bases
0
# of frame shifts
0
# of stop codons
0

Submission details

Submission ID
KF113528.1
Submitting group
Date submitted
2024-10-29 17:09:58 UTC
Date released
2024-10-29 17:11:08 UTC
Earliest release date
2015-03-17

Nucleotide mutations

Mutations called relative to the NC_002549.1 reference

Substitutions

  • G42A
  • T72C
  • A169G
  • G188A
  • T197C
  • C230T
  • T288C
  • C298A
  • A310C
  • G360A
  • G371C
  • T377C
  • G381A
  • A388G
  • G407A
  • A434G
  • A491G
  • G500A
    • Deletions
    18715
    Insertions
    ins_18619:T

    Amino acid mutations

    Mutations called relative to the NC_002549.1 reference

    Substitutions

    GP

  • GP:V3I
  • GP:T262A
  • GP:V310A
  • GP:N317D
  • GP:G331E
  • GP:N333Y
  • GP:E337G
  • GP:N346D
  • GP:S355N
  • GP:T366I
  • GP:L368F
  • GP:L378P
  • GP:P384Q
  • GP:S422P
  • GP:T435I
  • GP:T441A
  • GP:F443S
  • GP:S475G

    • L

  • L:V79I
  • L:E130D
  • L:I259V
  • L:A345D
  • L:K555E
  • L:Y874H
  • L:F1142V
  • L:S1383N
  • L:I1433T
  • L:V1562I
  • L:Y1594H
  • L:E1698G
  • L:N1708S
  • L:F1742S
  • L:T1832A
  • L:M1872T
  • L:K1919R
  • L:E2051D

    • NP

  • NP:I8V
  • NP:A11T
  • NP:Y87H
  • NP:S502L
  • NP:I517T
  • NP:I527T
  • NP:H534R
  • NP:R550G
  • NP:G596E
  • NP:S644P

    • VP24

  • VP24:G101S
  • VP24:K163Q
  • VP24:M212K

    • VP30

  • VP30:S4P
  • VP30:V25G
  • VP30:K57R
  • VP30:E285D

    • VP35

  • VP35:A12V
  • VP35:T68M
  • VP35:N204D

    • VP40

  • VP40:S32N

    • sGP

  • sGP:V3I
  • sGP:T262A
  • sGP:G331R
  • sGP:K337E
  • sGP:V355I

    • ssGP

  • ssGP:V3I
  • ssGP:T262A
    • Deletions
    None
    Insertions
    None

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