PP_0004GVK.2

Display Name: Hungary/PP_0004GVK.2/2023-01-01
Nagy, A.; Kerenyi, K.

Submission details

Submission ID
PP197726.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-09-26 15:01:22 UTC
Date released
2024-09-26 15:27:35 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 12:09insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
National Center for Public Health and Pharmacy, National Reference Laboratory for Viral Zoonoses

Alignment states and QC metrics

Completeness
3.80%
Length
420
Total ambiguous nucs
1
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
83
Total stop codons
0
Total unknown nucs
0

Sample details

Collection subdivision level 1
Szeged
Collection country
Hungary
Collection date
2023
Collection date (lower bound)
2023-01-01
Collection date (upper bound)
2023-12-31
Isolate name
4106_NS3_WNV_Hungary_2023

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
PP197726.1
NCBI release date
2024-01-30
NCBI update date
2024-01-30

Lineage

Lineage
2

Nucleotide mutations

Substitutions

  • G5219A
  • T5223A
  • G5226T
  • A5229C
  • G5232A
  • A5241G
  • A5250C
  • G5255A
  • C5260T
  • A5265G
  • A5268G
  • C5271T
  • G5274A
  • A5277G
  • G5280A
  • A5283C
  • T5292C
  • G5295T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    NS3

  • NS3:R203K
  • NS3:R215K
  • NS3:A233S
  • NS3:N253S
  • NS3:V283I
  • NS3:S302A
  • NS3:S331A
  • NS3:L336M
    • Deletions
    None
    Insertions
    None