PP_0004GK5.3

Display Name: Italy/PP_0004GK5.3/2023-08-11
G. Savini, F. Monaco, L. Teodori, G. Amatori, M. Marcacci & F. Valleriani

Sample details

Collection date
2023-08-11
Collection date (lower bound)
2023-08-11
Collection date (upper bound)
2023-08-11
Collection subdivision level 1
Veneto
Isolate name
TE.19712.2.2
Collection country
Italy

Data use terms

Data use terms
OPEN

Data use terms history

ChangedUserData use terms
2024-08-27 12:09insdc_ingest_userOPEN
Data use terms URL

Lineage

Lineage
1A

Authors

Author affiliations
Istituto Zooprofilattico Sperimentale 'G. Caporale', Viral Foreign Deseases of Animals

INSDC

NCBI release date
2024-02-02
NCBI update date
2024-02-02
INSDC accession

Host

Host taxon ID
Host name - scientific
Culex pipiens

Alignment and QC metrics

Total stop codons
0
Length
10967
Total SNPs
480
Total inserted nucs
0
Total deleted nucs
0
Total ambiguous nucs
0
Total unknown nucs
287
Total frame shifts
0
Completeness
96.84%

Submission details

Submission ID
PP104378.1
Submitting group
Date submitted
2024-10-29 17:09:23 UTC
Date released
2024-10-29 17:16:45 UTC
Earliest release date
2024-02-02

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A156T
  • G168A
  • T195A
  • C210T
  • G219A
  • T234C
  • C282T
  • G354A
  • G447T
  • T477C
  • C483T
  • G492A
  • G495T
  • T510C
  • C561T
  • C600T
  • T606C
  • A630G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:A70S

    • NS2A

  • NS2A:R122H

    • NS3

  • NS3:T356I

    • NS4A

  • NS4A:A85V

    • NS4B

  • NS4B:E249D

    • NS5

  • NS5:K432R

    • env

  • env:R93K
  • env:I126T
  • env:V159I
  • env:L167F
    • Deletions
    None
    Insertions
    None

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