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Status
PP_0004C70.3
All versions
PP_0004C70.1
(Revised)
PP_0004C70.2
(Revised)
PP_0004C70.3
(Latest version)
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Display Name: United_Kingdom/PP_0004C70.3/2022-11-01
Schilling,
M.; Dunkel,
B.; Floyd,
T.; Hicks,
D.; Nunez,
A.; Steinbach,
F.; Folly,
A. J.; Johnson,
N.
Submission details
Submission ID
OQ857020.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-10-29 17:09:23 UTC
Date released
2024-10-29 17:16:14 UTC
Data use terms
Data use terms
OPEN
✕
Data Use Terms History
Changed
User
Data Use Terms
2024-08-27 12:09
insdc_ingest_user
OPEN
Close
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Authors
Author affiliations
Animal and Plant Health Agency, Virology
Alignment states and QC metrics
Completeness
5.66%
Length
624
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
32
Total stop codons
0
Total unknown nucs
0
Sample details
Collection country
United Kingdom
Collection date
2022-11
Collection date (lower bound)
2022-11-01
Collection date (upper bound)
2022-11-30
Isolate name
WNV-SC-2022-08
Host
Host name scientific
Equus caballus
Host taxon id
9796
INSDC
INSDC accession
OQ857020.1
NCBI release date
2024-04-25
NCBI update date
2024-04-25
Lineage
Lineage
1A
Nucleotide mutations
Substitutions
C
8106
T
C
8130
T
C
8220
T
T
8235
C
G
8247
A
G
8271
A
A
8277
G
G
8292
A
C
8296
T
C
8301
T
T
8340
C
G
8346
A
T
8373
C
T
8382
C
C
8388
T
C
8400
T
A
8403
G
A
8409
G
Show more
Deletions
None
Insertions
None
Amino acid mutations
Substitutions
NS5
NS5:
K
280
R
Deletions
None
Insertions
None
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