PP_0003NDE.2

Display Name: Italy/PP_0003NDE.2/2022-11-01
Viscardi, M.; Cozzolino, L.; Cardillo, L.; De Martinis, C.; Fusco, G.

Submission details

Submission ID
OQ552605.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-09-26 15:01:22 UTC
Date released
2024-09-26 15:23:59 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 12:09insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Istituto Zooprofilattico Sperimentale del Mezzogiorno, Hanimal Health

Alignment and QC metrics

Completeness
99.53%
Length
10977
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
461
Total stop codons
0
Total unknown nucs
0

Sample details

Earliest release date
2023-07-18
Collection subdivision level 1
Campania region
Collection country
Italy
Collection date
2022-11
Collection date (lower bound)
2022-11-01
Collection date (upper bound)
2022-11-30
Isolate name
WND 95511/22 Lin1

Host

Host name scientific
Equus caballus
Host taxon id
9796

INSDC

INSDC accession
OQ552605.1
NCBI release date
2023-07-18
NCBI update date
2023-07-18

Lineage

Lineage
1A

Nucleotide mutations

Mutations called relative to the NC_009942.1 reference

Substitutions

  • A108G
  • T195A
  • T234C
  • G354A
  • T367C
  • C483T
  • G492A
  • G495T
  • C561T
  • C600T
  • T606C
  • T615C
  • A630G
  • T639C
  • T666C
  • C672T
  • G786A
  • C810T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Mutations called relative to the NC_009942.1 reference

    Substitutions

    NS1

  • NS1:A70S
  • NS1:L198M

    • NS2B

  • NS2B:M99T
  • NS2B:V103A

    • NS3

  • NS3:P249T
  • NS3:T356I

    • NS4A

  • NS4A:A85V

    • NS4B

  • NS4B:L96I
  • NS4B:E249D

    • env

  • env:A51T
  • env:I126T
  • env:V159I
  • env:L167F
    • Deletions
    None
    Insertions
    None

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