PP_0003LMZ.2

Display Name: Italy/PP_0003LMZ.2/2022-10-03
Savini, G.; Monaco, F.; Mencattelli, G.; Curini, V.; Teodori, L.; Polci, A.

Submission details

Submission ID
OP850023.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-09-26 15:01:22 UTC
Date released
2024-09-26 15:23:29 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 12:09insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise 'G. Caporale', Animals Foreign Diseases

Alignment states and QC metrics

Completeness
92.29%
Length
10960
Total ambiguous nucs
1
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
437
Total stop codons
0
Total unknown nucs
780

Sample details

Collection subdivision level 1
Campania
Collection country
Italy
Collection date
2022-10-03
Collection date (lower bound)
2022-10-03
Collection date (upper bound)
2022-10-03

Host

Host name scientific
Equus caballus
Host taxon id
9796

INSDC

INSDC accession
OP850023.1
NCBI release date
2023-06-05
NCBI update date
2023-06-05

Lineage

Lineage
1A

Nucleotide mutations

Substitutions

  • A108G
  • T195A
  • T234C
  • G354A
  • T367C
  • C483T
  • G492A
  • G495T
  • C561T
  • C600T
  • T606C
  • T615C
  • A630G
  • T639C
  • T666C
  • C672T
  • G786A
  • C810T
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    NS1

  • NS1:A70S
  • NS1:I184V
  • NS1:L198M

    • NS2B

  • NS2B:M99T
  • NS2B:V103A

    • NS3

  • NS3:P249T
  • NS3:T356I

    • NS4A

  • NS4A:A85V

    • NS4B

  • NS4B:L96I
  • NS4B:E249D

    • NS5

  • NS5:S237G

    • env

  • env:A51T
  • env:I126T
  • env:V159I
  • env:L167F
    • Deletions
    None
    Insertions
    None