PP_0003LK3.3

Display Name: Italy/PP_0003LK3.3/2022-09-12
Savini, G.; Monaco, F.; Mencattelli, G.; Curini, V.; Teodori, L.; Polci, A.

Submission details

Submission ID
OP850021.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-10-29 17:09:23 UTC
Date released
2024-10-29 17:15:43 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 12:09insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Istituto Zooprofilattico Sperimentale dell'Abruzzo e del Molise 'G. Caporale', Animals Foreign Diseases

Alignment states and QC metrics

Completeness
99.40%
Length
10963
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
487
Total stop codons
0
Total unknown nucs
0

Sample details

Collection subdivision level 1
Lombardy
Collection country
Italy
Collection date
2022-09-12
Collection date (lower bound)
2022-09-12
Collection date (upper bound)
2022-09-12

Host

Host name scientific
Corvus cornix
Host taxon id
181096

INSDC

INSDC accession
OP850021.1
NCBI release date
2023-06-05
NCBI update date
2023-06-05

Lineage

Lineage
1A

Nucleotide mutations

Substitutions

  • A156T
  • G168A
  • T195A
  • C210T
  • G219A
  • T234C
  • C282T
  • G354A
  • G447T
  • T477C
  • C483T
  • G492A
  • G495T
  • T510C
  • C561T
  • C600T
  • T606C
  • A630G
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    NS1

  • NS1:A70S

    • NS2A

  • NS2A:R122H

    • NS2B

  • NS2B:V103A

    • NS3

  • NS3:T356I

    • NS4A

  • NS4A:A85V

    • NS4B

  • NS4B:I245M
  • NS4B:E249D

    • NS5

  • NS5:K432R

    • env

  • env:R93K
  • env:I126T
  • env:V159I
  • env:L167F
    • Deletions
    None
    Insertions
    None