PP_000042S.2

Display Name: Uganda/PP_000042S.2/2022-10-24
A. Kagirita, A. Tumusiime, A.R. Ario, C. Nassuna, D. Atwine, E. Shedroff, F. Scholte, G. Pimundu, H.G. Mwebesa, H.K. Bosa, I. Krapiunaya, I. Ssewanyana, J. Baluku, J. Kiconco, J. Klena, J. Kyondo, J. Montgomery, J.D. Klena, J.J. Lutwama, J.M. Montgomery, J.R. Aceng, J.R. Harris, L. Nyakarahuka, M. Kainulainen, ..., T.R. Shoemaker

Submission details

Submission ID
OQ673045.1
Submitter
insdc_ingest_user
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-09-09 16:57:50 UTC
Date released
2024-09-09 16:58:04 UTC

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 12:07insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
Centers for Disease Control and Prevention, Viral Special Pathogens Branch

Alignment states and QC metrics

Completeness
99.93%
Length
18848
Total ambiguous nucs
1
Total deleted nucs
17
Total frame shifts
0
Total inserted nucs
2
Total SNPs
136
Total stop codons
0
Total unknown nucs
0

Sample details

Collection subdivision level 2
Africa
Collection country
Uganda
Collection date
2022-10-24
Isolate name
Ebolavirus/H.sapiens-wt/Uganda/2022/2022003468_C118

Host

Host name scientific
Homo sapiens
Host taxon id
9606

INSDC

INSDC accession
OQ673045.1
NCBI release date
2023-08-08
NCBI update date
2024-09-09

Nucleotide mutations

Substitutions

  • A8T
  • T28C
  • T29C
  • T39C
  • G40A
  • A309G
  • A314G
  • A496G
  • G575A
  • T718C
  • G982A
  • T1063C
  • A1516G
  • A1537C
  • C1646T
  • A1669G
  • T1816G
  • C1837T
    • Deletions
    10-26
    Insertions
    ins_34:GC

    Amino acid mutations

    Substitutions

    GP

  • GP:G3S
  • GP:A187T
  • GP:S408N

    • L

  • L:K43R
  • L:K651N
  • L:A821V
  • L:I954V
  • L:D1383E
  • L:S1585P
  • L:V1600I
  • L:N1822D
  • L:P1877S
  • L:K1911R
  • L:N1916T

    • NP

  • NP:V40I
  • NP:S546L
  • NP:G645R
  • NP:L721F

    • VP30

  • VP30:V71I

    • VP35

  • VP35:N153S
  • VP35:I190T

    • VP40

  • VP40:R2K

    • sGP

  • sGP:G3S
  • sGP:A187T

    • ssGP

  • ssGP:G3S
  • ssGP:A187T
    • Deletions
    None
    Insertions
    None