PP_00000UB.4

Display Name: Uganda/PP_00000UB.4/2000-10-16
Das, S. R.; Shabman, R.; Halpin, R. A.; Akopov, A.; Fedorova, N.; Puri, V.; Stockwell, T.; Amedeo, P.; Bishop, B.; Katzel, D.; Schobel, S.; Shrivastava, S.; Brasel, T.; Yun, N.; Paessler, S.; Dowling, W.; Barrett, A.

Submission details

Submission ID
KU182912.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2024-11-27 15:48:23 UTC
Date released
2024-11-27 16:03:51 UTC
Version comment
https://github.com/pathoplexus/curation_reports/issues/2

Data use terms

Data use terms
OPEN

Data Use Terms History

ChangedUserData Use Terms
2024-08-27 12:07insdc_ingest_userOPEN
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data

Authors

Author affiliations
J. Craig Venter Institute

INSDC

Bioproject accession
PRJNA242964
INSDC accession
KU182912.1
NCBI release date
2015-12-22
NCBI update date
2015-12-22

Alignment states and QC metrics

Completeness
100.00%
Length
18875
Total ambiguous nucs
0
Total deleted nucs
0
Total frame shifts
0
Total inserted nucs
0
Total SNPs
4
Total stop codons
0
Total unknown nucs
0

Sample details

Collection country
Uganda
Collection date
2000-10-16
Collection date (lower bound)
2000-10-16
Collection date (upper bound)
2000-10-16
Isolate name
Sudan virus/H. sapiens-tc/SDN/2000/Gulu-200011676

Host

Host name scientific
Homo sapiens
Host taxon id
9606
Is lab host
True

Nucleotide mutations

Substitutions

  • C2618T
  • C5320T
  • G5902T
  • A18875C
    • Deletions
    None
    Insertions
    None

    Amino acid mutations

    Substitutions

    NP

  • NP:L721F
    • Deletions
    None
    Insertions
    None