PP_008627Y.1

Madagascar/PP_008627Y.1/2026-05-03
S. Anderson, A. Kelleher, X. Lu, P. R. Lourenco, P. Mandal, C. Smith, P. W. Cook, C. R. Paden & L. Atherton

Centers for Disease Control and Prevention, Coronaviruses and Other Respiratory Viruses Division

Sample details

Collection date
2026-05-03
Sampling location
Madagascar
Isolate name
HRSV/A/MDG/ALA-CDC-10453364-001/2026

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
A.D.1.4

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-11-10
NCBI update date
2026-11-10
Raw reads accession

Host

Host

Submission details

Submission ID
QB263928.1
Submitting group
Date submitted
2026-11-12 05:32:50 UTC
Date released
2026-11-12 05:33:59 UTC
Earliest release date
2026-11-10

Files

Annotations

Alignment and QC

Length
15209 (99.9%)
# of SNPs
262
# of deleted bases
3

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • T66A
  • A67G
  • C90T
  • C183T
  • G198A
  • G240A
  • A493G
  • G551A
  • C622T
  • G664A
  • T675C
  • T697C
  • C782T
  • T832C
  • C853T
  • T892C
  • T922C
  • G1000A
Deletions
4175, 4592, 15115
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:L3S

G

  • G:P71L
  • G:H90Y
  • G:L101F
  • G:N103T
  • G:A122V
  • G:I133V
  • G:I134K
  • G:L142S
  • G:S144I
  • G:G224V
  • G:V225A
  • G:L226F
  • G:S243I
  • G:K262E
  • G:I265L
  • G:S270P
  • G:Y273H
  • G:D284G

L

  • L:N143D
  • L:D146G
  • L:P171L
  • L:T179S
  • L:R256K
  • L:Y598H
  • L:C1184Y
  • L:L1438Q
  • L:I1653V
  • L:I1656T
  • L:K1661N
  • L:N1719S
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:G1735D
  • L:I1752M
  • L:V1934I

M

  • M:M43I

M2-1

  • M2-1:S176P

M2-2

  • M2-2:Y24C
  • M2-2:S44N

N

  • N:V352A

NS2

  • NS2:I26T

P

  • P:L55P
  • P:I62T
Deletions
N/A
Insertions
N/A

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