PP_00861XJ.1

Madagascar/PP_00861XJ.1/2026-05-14
S. Anderson, A. Kelleher, X. Lu, P. R. Lourenco, P. Mandal, C. Smith, P. W. Cook, C. R. Paden & L. Atherton

Centers for Disease Control and Prevention, Coronaviruses and Other Respiratory Viruses Division

Sample details

Collection date
2026-05-14
Sampling location
Madagascar
Isolate name
HRSV/A/MDG/ALA-CDC-10453366-001/2026

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
A.D.3

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-11-10
NCBI update date
2026-11-10
Raw reads accession

Host

Host

Submission details

Submission ID
QB263918.1
Submitting group
Date submitted
2026-11-12 05:32:50 UTC
Date released
2026-11-12 05:33:59 UTC
Earliest release date
2026-11-10

Files

Annotations

Alignment and QC

Length
15214 (99.9%)
# of SNPs
234
# of inserted bases
2
# of ambiguous bases
2

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • A47G
  • T59C
  • G62A
  • T66A
  • A67G
  • C90T
  • C183T
  • C294T
  • G587T
  • A796G
  • G972A
  • G1000A
  • C1012T
  • G1034A
  • C1047T
  • G1050A
  • G1077A
  • T1218C
Deletions
N/A
Insertions
ins_3154:A, ins_7586:A

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:T12I
  • F:M115T
  • F:S276N

G

  • G:H90Y
  • G:L101F
  • G:L104M
  • G:T113I
  • G:P120L
  • G:P126L
  • G:V131D
  • G:I134K
  • G:T136A
  • G:N178G
  • G:T210I
  • G:G224E
  • G:V225A
  • G:P230T
  • G:S243I
  • G:N251Y
  • G:H258Q
  • G:K262E

L

  • L:T104N
  • L:I139V
  • L:E147K
  • L:P171H
  • L:A173S
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:G1550S
  • L:N1723S
  • L:E1725G
  • L:G1731D
  • L:K2041T
  • L:V2129I

M2-1

  • M2-1:R20K
  • M2-1:S176P

M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:T77A

N

  • N:V352A

P

  • P:L55P
  • P:T92I

SH

  • SH:F50Y
Deletions
N/A
Insertions
N/A

Report an issue with this sequence or metadata

Create GitHub issue