PP_00861WL.1

Madagascar/PP_00861WL.1/2026-05-04
S. Anderson, A. Kelleher, X. Lu, P. R. Lourenco, P. Mandal, C. Smith, P. W. Cook, C. R. Paden & L. Atherton

Centers for Disease Control and Prevention, Coronaviruses and Other Respiratory Viruses Division

Sample details

Collection date
2026-05-04
Sampling location
Madagascar
Isolate name
HRSV/A/MDG/ALA-CDC-10453393-001/2026

Data use terms

Data use terms
OPEN
Data use terms URL

Lineage

Lineage
A.D.3

INSDC

INSDC accession
BioProject accession
BioSample accession
NCBI release date
2026-11-10
NCBI update date
2026-11-10
Raw reads accession

Host

Host

Submission details

Submission ID
QB263917.1
Submitting group
Date submitted
2026-11-12 05:32:50 UTC
Date released
2026-11-12 05:33:59 UTC
Earliest release date
2026-11-10

Files

Annotations

Alignment and QC

Length
15218 (99.9%)
# of SNPs
235
# of inserted bases
2

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • A43G
  • T59C
  • T66A
  • A67G
  • C90T
  • C183T
  • C267T
  • T372C
  • G587T
  • C790T
  • C1012T
  • G1034A
  • G1050A
  • G1077A
  • A1197T
  • T1359C
  • G1368A
  • T1413A
Deletions
N/A
Insertions
ins_3154:A, ins_15115:T

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:T12I
  • F:L20F

G

  • G:A57V
  • G:P71L
  • G:H90Y
  • G:L91I
  • G:L101F
  • G:T113I
  • G:V131D
  • G:I134K
  • G:N178G
  • G:T210A
  • G:G224E
  • G:S243I
  • G:H258Q
  • G:Q261R
  • G:K262E
  • G:I265L
  • G:H266L
  • G:S283F
  • G:D284G
  • G:P298L

L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:N1723S
  • L:E1725G
  • L:G1731D

M

  • M:I159T

M2-1

  • M2-1:S176P

M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:T77A

N

  • N:V352A

P

  • P:L55P
  • P:T92M
  • P:S215H

SH

  • SH:V49A
Deletions
N/A
Insertions
N/A

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