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PP_0085QXX.1
Download
Download FASTA
Download metadata TSV
Restricted-Use sequence
This sequence is only available under the
Restricted Use Terms
. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.
Brazil/ITpS_u36_001lf_001/2026-04-07
A. Pérez &
R. Moreira
Universidade Federal de Minas Gerais (UFMG)
Sample details
Collection date
2026-04-07
Sampling location
Brazil (Minas Gerais)
City
Betim
Data use terms
Data use terms
RESTRICTED
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/restricted-data
Clade
Clade
II-ECSA
Host
Host
human (Homo sapiens)
Host gender
Male
Sequencing
Sequencing instrument
NextSeq 1000
Depth of coverage
605
Submission details
Submission ID
ITpS_u36_001lf_001
Submitting group
Genomica para vigilancia oportuna de patogenos (Gevop)
Date submitted
2026-11-09 16:48:46 UTC
Date released
2026-11-09 16:49:36 UTC
Earliest release date
2026-11-09
Files
Annotations
PP_0085QXX.1.embl
Alignment and QC
Length
11826 (100%)
# of SNPs
377
# of ambiguous bases
1
Nucleotide mutations
Mutations called relative to the
NC_004162.2
reference
Substitutions
T
163
C
T
265
C
T
268
C
T
271
C
G
277
A
T
334
C
C
385
T
A
481
G
A
493
C
A
521
G
T
590
G
T
610
C
C
661
T
T
670
C
T
679
C
C
745
T
A
766
G
A
769
G
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_004162.2
reference
Substitutions
6K
6K:
I
54
V
C
C:
F
3
Y
C:
Q
37
H
C:
K
63
R
C:
Q
74
R
C:
H
119
Y
E1
E1:
K
211
T
E1:
T
288
I
E1:
A
305
T
E1:
V
322
A
E1:
A
377
V
E1:
M
407
L
E2
E2:
G
57
K
E2:
I
74
T
E2:
G
79
E
E2:
A
103
T
E2:
N
160
T
E2:
A
164
T
E2:
L
181
M
E2:
S
194
G
E2:
M
267
R
E2:
S
299
N
E2:
Q
307
R
E2:
A
344
T
E2:
I
377
V
E2:
M
384
V
E3
E3:
I
23
T
E3:
K
29
R
nsP1
nsP1:
I
149
V
nsP1:
L
172
V
nsP1:
E
234
K
nsP1:
M
383
L
nsP1:
I
384
L
nsP1:
T
481
I
nsP1:
L
507
R
nsP2
nsP2:
P
352
A
nsP2:
H
374
Y
nsP2:
M
466
L
nsP2:
A
545
S
nsP2:
C
642
Y
nsP2:
S
643
N
nsP2:
A
645
V
nsP2:
G
671
V
nsP3
nsP3:
S
77
L
nsP3:
V
175
I
nsP3:
P
326
S
nsP3:
Q
328
P
nsP3:
S
330
A
nsP3:
V
331
A
nsP3:
K
352
E
nsP3:
A
370
T
nsP3:
G
374
R
nsP3:
I
376
T
nsP3:
A
382
T
nsP3:
L
434
P
nsP3:
C
435
R
nsP3:
S
462
N
nsP3:
R
524
*
nsP4
nsP4:
A
43
V
nsP4:
P
93
S
nsP4:
I
111
V
nsP4:
A
481
D
nsP4:
Q
500
L
nsP4:
I
514
T
nsP4:
V
555
I
nsP4:
V
604
I
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Reference-aligned nucleotide sequence
Reference-aligned amino acid sequences
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