PP_00847UN.1

Brazil/ITpS_5bF_001pM_001/2026-05-04
A. B. Muniz, D. Silva, F. O. Nascimento, M. Mejía, V. Nascimento, V. Souza & F. Naveca

Instituto Leônidas e Maria Deane - Fiocruz AM

Sample details

Collection date
2026-05-04
Sampling location
Brazil (Amazonas)
City
Manaus

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
A.D.3.3

Host

Host
Host gender
Male

Sequencing

Sequencing instrument
NextSeq 1000
Depth of coverage
19254

Submission details

Submission ID
ITpS_5bF_001pM_001
Submitting group
Date submitted
2026-11-03 17:08:16 UTC
Date released
2026-11-03 17:08:53 UTC
Earliest release date
2026-11-03

Files

Annotations

Alignment and QC

Length
15102 (99.8%)
# of SNPs
223
# of inserted bases
15
# of deleted bases
113

Nucleotide mutations

Mutations called relative to the PP109421.1 reference

Substitutions
  • G74A
  • C90T
  • C183T
  • T261C
  • C300T
  • A354G
  • A429T
  • T501C
  • T560C
  • G587T
  • C978T
  • A993G
  • C1012T
  • A1018G
  • G1034A
  • G1050A
  • G1077A
  • T1137C
Deletions
29-68, 4592, 5435-5506
Insertions
ins_3154:A, ins_7586:AA, ins_15115:T, ins_15225:GTTTTTGACAC

Amino acid substitutions

Substitutions called relative to the PP109421.1 reference

Substitutions

F

  • F:T12I
  • F:C21R

G

  • G:P71L
  • G:D78N
  • G:H90Y
  • G:L97F
  • G:L101F
  • G:L104P
  • G:T113I
  • G:V131D
  • G:I134K
  • G:N178G
  • G:K204N
  • G:G224E
  • G:S243I
  • G:N255D
  • G:H258Q
  • G:H290L
  • G:P298L

L

  • L:P171L
  • L:R256K
  • L:Y598H
  • L:L835M
  • L:L1438Q
  • L:N1723S
  • L:E1725G
  • L:G1731D

M2-1

  • M2-1:P120L
  • M2-1:S176P

M2-2

  • M2-2:Y24C
  • M2-2:S44N
  • M2-2:H45Y
  • M2-2:T77A

N

  • N:V352A

NS1

  • NS1:G2D

P

  • P:L55P
  • P:T92M

SH

  • SH:C45S
Deletions

G

G:262-285
Insertions
N/A

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