PP_0082CCL.1

Nigeria/NRL-EVD-26-006/2026-10-19
Adesuyi A. Omoare, Chimaobi Chukwu, Khadijah I. Imam, Busayo K. Akomolafe, Chima E. Ihemeje, Richard O. Ojedele, Leviticus Mangpin, Chibuike C. Korie, Glory I. Jayeoba, Danladi P. Nengak, Saadatu A. Abubakar, Adama Ahmad, Adesola Adeleye, Eugene Bwede, Item Item, Love I. Ikulughan, Mustapha Lawal, James Onwuka, Ibtihaj L. Kabir, Mariam S. Lawal, Tosin Afowowe, Ifeanyi Omah, Elijah O. Kolawole, Nnaemeka D. Ndodo, Amos Dangana, Olajumoke Babatunde, Jide. Idris & Muhammad Ali Pate

Nigeria Centre for Disease Control and Prevention, Broad institute of Harvard MIT, Adeleke University Ede Osun, Nigeria State; Helix Biogen Institute Ogbomoso Oyo State Nigeria, International Institute for Zoonosis Control Hokkaido University, Japan.

Sample details

Collection date
2026-10-19
Sample received date
2026-10-19
Sampling location
Nigeria (Abuja)
City
Abuja

Outbreak

Amino acid substitutions from outbreak clade founder
  • GP:P344S
  • L:A138V
  • L:I1562L
  • NP:S528T
Outbreak
Bdbv-2026

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Sampling

Sample type
Blood
Purpose of sampling
Diagnostic testing
Anatomical material
Blood
Anatomical part
vein
Body product
NA
Collection device
EDTA
Collection method
phlebotomy

Specimen processing

Experimental specimen role type
Sample under study

Host

Host
Host gender
Female
Host origin country
Nigeria
Host health state
Federal Capital Territory
Travel history
Uganda; Nigeria

Sequencing

Purpose of sequencing
Genomic epidemioloy
Sequencing instrument
NextSeq 2000
Sequencing protocol
Viral surveillance panel 2
Sequencing library selection
other
Sequencing library source
METAGENOMIC
Sequencing assay type
WGS
Sequenced by - organization
Nigeria centre for Disease control and prevention
Sequenced by - contact name
chimaobi chukwu
Sequenced by - contact email
chimaobi.chukwu@ncdc.gov.ng
Dehosting method
hostile
Reference genome accession
NC_014373.1
Consensus sequence software name
ivar
Consensus sequence software version
1.3.1
Depth of coverage
1298
Breadth of coverage
99
Quality control determination
NA
Quality control issues
NA
Quality control details
Low Negative control values,

Diagnostics

Diagnostic measurement - method
RT-PCR
Diagnostic target - presence
True
Diagnostic measurement - value
22
Diagnostic measurement - unit
CT

Submission details

Submission ID
NRL-EVD-26-006
Submitting group
Date submitted
2026-10-23 17:25:31 UTC
Date released
2026-10-23 19:54:37 UTC
Earliest release date
2026-10-23

Files

Annotations

Alignment and QC

Length
18918 (99.9%)
# of SNPs
227
# of inserted bases
1

Nucleotide mutations

Mutations called relative to the NC_014373.1 reference

Substitutions
  • C135T
  • C261T
  • A266G
  • C530T
  • A532G
  • T586C
  • G832A
  • C1018T
  • A1066G
  • T1375C
  • T1405C
  • C1675A
  • C1702T
  • T1774G
  • G1924A
  • A1943G
  • A1954G
  • A2007G
Deletions
N/A
Insertions
ins_18712:T

Amino acid substitutions

Substitutions called relative to the NC_014373.1 reference

Substitutions

GP

  • GP:Y151F
  • GP:E188K
  • GP:P344S
  • GP:P365S
  • GP:P367L
  • GP:Y387H
  • GP:P389L
  • GP:R394G
  • GP:T458I
  • GP:P481L
  • GP:T486I
  • GP:A489V
  • GP:R506S

GP_003

  • GP_003:Y151F
  • GP_003:E188K
  • GP_003:T320I
  • GP_003:P328L
  • GP_003:Q367*

L

  • L:A138V
  • L:V402I
  • L:L1011F
  • L:S1323A
  • L:N1342H
  • L:I1562L
  • L:K1570R
  • L:L1595Q
  • L:I1664R
  • L:K1738N
  • L:Q1770R
  • L:N1771D
  • L:I1784V
  • L:R1954G
  • L:E1969D
  • L:A2191V

NP

  • NP:N496D
  • NP:Q517R
  • NP:G524S
  • NP:S528T
  • NP:V531A
  • NP:R537K
  • NP:V544I
  • NP:D546N
  • NP:A569V

VP24

  • VP24:S24N

VP30

  • VP30:H5Y

VP35

  • VP35:N79S
  • VP35:G187E
  • VP35:M192I

VP40

  • VP40:I14M
  • VP40:A31S
Deletions
N/A
Insertions
N/A

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