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PP_00822N9.1
Download
Download FASTA
Download metadata TSV
DENV-1/Kenya/PP_00822N9.1/2026-04-28
J. N. Kamau,
G. Kerich,
J. Thiiru,
J. Ambale,
P. Kyalo,
C. Ojino,
L. Awuor,
D. Oullo,
S. Yalwala,
F. Ngere,
N. Odemba,
C. Waga,
R. Odinga,
E. Achieng,
G. Otedo,
E. Kioko,
A. Mann &
J. Lutomiah
WRAIR-Africa (Kenya), Entomology
Sample details
Collection date
2026-04-28
Sampling location
Kenya (Mombasa County, KPA Ports)
Isolate name
MBSA/S2/51918B
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Lineage & Serotype
Lineage
1III_A.2
Serotype
DENV-1
INSDC
INSDC accession
QB174221.1
NCBI release date
2026-10-19
NCBI update date
2026-10-19
Host
Host
yellow fever mosquito (Aedes aegypti)
Submission details
Submission ID
QB174221.1
Submitting group
Automated Ingest from INSDC/NCBI Virus by Loculus
Date submitted
2026-10-20 09:30:44 UTC
Date released
2026-10-20 09:30:55 UTC
Earliest release date
2026-10-19
Files
Annotations
PP_00822N9.1.embl
Alignment and QC
Length
10427 (97.3%)
# of SNPs
853
# of deleted bases
21
Nucleotide mutations
Mutations called relative to the
NC_001477.1
reference
Substitutions
A
112
G
T
171
G
T
208
C
T
230
A
T
244
C
T
274
C
G
302
A
C
328
T
G
340
A
G
349
A
A
355
G
A
363
G
T
368
C
G
388
A
T
397
C
C
412
T
T
442
C
C
443
T
Show more
Deletions
10296-10311, 10318-10322
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_001477.1
reference
Substitutions
C
C:
V
26
G
C:
L
46
M
C:
G
70
S
C:
N
90
S
E
E:
D
37
N
E:
T
88
A
E:
I
114
L
E:
T
161
I
E:
K
203
E
E:
I
293
T
E:
M
297
V
E:
F
337
I
E:
S
339
T
E:
A
369
T
E:
V
380
I
E:
V
428
M
E:
I
436
V
E:
I
439
L
NS1
NS1:
V
89
I
NS1:
V
93
A
NS1:
S
94
N
NS1:
A
98
T
NS1:
V
128
T
NS1:
T
131
A
NS1:
N
139
D
NS1:
N
146
D
NS1:
I
162
V
NS1:
V
178
M
NS1:
K
227
R
NS1:
D
278
N
NS1:
T
307
I
NS1:
K
324
R
NS1:
K
347
R
NS2A
NS2A:
F
8
L
NS2A:
I
15
V
NS2A:
L
41
F
NS2A:
T
44
I
NS2A:
A
64
V
NS2A:
K
67
R
NS2A:
R
82
K
NS2A:
V
106
I
NS2A:
A
147
T
NS2A:
V
155
I
NS2A:
K
156
R
NS2A:
F
159
L
NS2A:
H
162
D
NS2A:
I
171
V
NS2A:
L
199
F
NS2B
NS2B:
K
55
R
NS2B:
I
106
V
NS3
NS3:
E
43
D
NS3:
A
91
T
NS3:
A
112
T
NS3:
R
185
K
NS3:
V
221
I
NS3:
Y
349
H
NS3:
V
384
I
NS3:
V
452
A
NS4A
NS4A:
R
76
K
NS4A:
I
89
M
NS4A:
A
93
V
NS4B
NS4B:
A
18
V
NS4B:
A
19
V
NS4B:
A
27
T
NS4B:
V
31
I
NS4B:
K
212
R
NS5
NS5:
I
34
M
NS5:
L
123
I
NS5:
K
130
R
NS5:
I
181
V
NS5:
V
270
I
NS5:
K
364
R
NS5:
A
365
P
NS5:
R
378
K
NS5:
E
559
Q
NS5:
N
585
S
NS5:
A
616
V
NS5:
T
635
N
NS5:
P
636
S
NS5:
V
642
A
NS5:
K
647
E
NS5:
T
651
V
NS5:
I
669
T
NS5:
F
881
Y
prM
prM:
S
15
T
prM:
T
59
A
prM:
E
72
D
prM:
K
118
R
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Reference-aligned nucleotide sequence
Reference-aligned amino acid sequences
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