DENV-2/Switzerland/TI-SUPSI-T2_PRE/2026-09
G. Zezza, M. Lettieri, A. Nobile, G. Capoferri, N. Liechti, S. Frigerio-Malossa, G. Bernasconi, F. Ceruti, G. Merlani, O. Engler, C. Metzger, E. Flacio & V. Guidi

Institute of Microbiology, University of Applied Sciences and Arts of Southern Switzerland; Ufficio del Medico Cantonale, Department of Public Health and Social Welfare; Malattie infettive, Ospedale San Giovanni; Spiez Laboratory, Federal Office for Civil Protection; Istituto di Diagnostica Integrata della Svizzera Italiana, Cantonal Hospital Organization; Pronto Soccorso, Ospedale San Giovanni

Sample details

Collection date
2026-09
Sampling location
Switzerland (Ticino)

Data use terms

Data use terms
RESTRICTED

Lineage & Serotype

Lineage
2II_F.1.1.5
Serotype
DENV-2

Sequencing

Sequencing instrument
GridION
Sequencing protocol
Amplicon
Depth of coverage
1000

Submission details

Submission ID
DENV-2/Switzerland/TI-SUPSI-T2_PRE/2026-09
Submitting group
Date submitted
2026-10-16 10:17:33 UTC
Date released
2026-10-16 10:19:17 UTC
Earliest release date
2026-10-16

Files


Alignment and QC

Length
10599 (98.8%)
# of SNPs
837

Nucleotide mutations

Mutations called relative to the NC_001474.2 reference

Substitutions
  • G44A
  • C54T
  • A122G
  • C126T
  • G168A
  • A177G
  • G210A
  • A228G
  • G252A
  • A276G
  • G294A
  • G297A
  • T312C
  • A324G
  • A328G
  • T330C
  • T336C
  • G372T
Deletions
N/A
Insertions
N/A

Amino acid substitutions

Substitutions called relative to the NC_001474.2 reference

Substitutions

C

  • C:K9R
  • C:I78V
  • C:S101T
  • C:M104I
  • C:L108M

E

  • E:M6I
  • E:I23V
  • E:Q52H
  • E:E71A
  • E:R120T
  • E:V129I
  • E:H149N
  • E:I164V
  • E:I322V
  • E:N390S
  • E:I462V
  • E:T478S
  • E:I484V

NS1

  • NS1:S80T
  • NS1:T117A
  • NS1:S128L
  • NS1:Q131H
  • NS1:K174R
  • NS1:F178S
  • NS1:N222S
  • NS1:L247F
  • NS1:I264T
  • NS1:T265A
  • NS1:K272R
  • NS1:D281E

NS2A

  • NS2A:V5I
  • NS2A:K135R
  • NS2A:M136I
  • NS2A:I171A

NS2B

  • NS2B:L21F
  • NS2B:V59I
  • NS2B:K60R
  • NS2B:D63E

NS3

  • NS3:M13V
  • NS3:K15R
  • NS3:A120T
  • NS3:I140V
  • NS3:A160T
  • NS3:R186K
  • NS3:V273I
  • NS3:I333M
  • NS3:V395I
  • NS3:I461V

NS4A

  • NS4A:D23N
  • NS4A:R76K
  • NS4A:I89V

NS4B

  • NS4B:L13F
  • NS4B:A19T
  • NS4B:V48I
  • NS4B:V91A
  • NS4B:F112L
  • NS4B:T244A

NS5

  • NS5:I5T
  • NS5:S15N
  • NS5:M70L
  • NS5:R98K
  • NS5:I135T
  • NS5:T176I
  • NS5:Y247H
  • NS5:I271T
  • NS5:V335I
  • NS5:R430G
  • NS5:K570R
  • NS5:G605V
  • NS5:I637A
  • NS5:Q644K
  • NS5:A648V
  • NS5:S676N
  • NS5:I687V
  • NS5:K800T
  • NS5:A865T

prM

  • prM:D29N
  • prM:K52N
  • prM:T82A
  • prM:M83T
  • prM:V120A
  • prM:M135I
  • prM:A152V
  • prM:T162A
Deletions
N/A
Insertions
N/A

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