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PP_007ZXV6.1
Download
Download FASTA
Download metadata TSV
DENV-2/Switzerland/3500-26-0001/2026-08-28
Samuel Cordey,
Florian Laubscher,
Francisco-Javier Pérez-Rodríguez,
Manuel Schibler,
Valentine Thomasson &
Valentin Chudzinski
Geneva University Hospitals, Geneva, Switzerland
Sample details
Collection date
2026-08-28
Sampling location
Switzerland
Data use terms
Data use terms
OPEN
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/open-data
Lineage & Serotype
Lineage
2II_F.1.1.5
Serotype
DENV-2
INSDC
BioProject accession
PRJEB128194
BioSample accession
SAMEA123901591
Host
Host
human (Homo sapiens)
Sequencing
Sequencing instrument
Illumina MiSeq
Sequencing protocol
Viral genomes were generated by metagenomic sequencing of total RNA. Libraries were prepared using the TruSeq Stranded Total RNA Library Prep Gold kit (Illumina) and sequenced on an Illumina MiSeq instrument using MiSeq Reagent Kit v3 (150 cycles).
Submission details
Submission ID
3500-26-0001
Submitting group
National Reference Centre for Emerging Viral Infections (CRIVE)
Date submitted
2026-10-05 14:16:26 UTC
Date released
2026-10-05 14:17:17 UTC
Earliest release date
2026-10-05
Files
Annotations
PP_007ZXV6.1.embl
Alignment and QC
Length
10667 (99.5%)
# of SNPs
839
Nucleotide mutations
Mutations called relative to the
NC_001474.2
reference
Substitutions
A
13
G
G
44
A
C
54
T
A
122
G
C
126
T
G
168
A
A
177
G
G
210
A
A
228
G
G
252
A
A
276
G
G
294
A
G
297
A
T
312
C
A
324
G
A
328
G
T
330
C
T
336
C
Show more
Deletions
N/A
Insertions
N/A
Amino acid substitutions
Substitutions called relative to the
NC_001474.2
reference
Substitutions
C
C:
K
9
R
C:
I
78
V
C:
S
101
T
C:
M
104
I
C:
L
108
M
E
E:
M
6
I
E:
I
23
V
E:
Q
52
H
E:
E
71
A
E:
R
120
T
E:
V
129
I
E:
H
149
N
E:
I
164
V
E:
I
322
V
E:
N
390
S
E:
I
462
V
E:
T
478
S
E:
I
484
V
NS1
NS1:
S
80
T
NS1:
T
117
A
NS1:
S
128
L
NS1:
Q
131
H
NS1:
K
174
R
NS1:
F
178
S
NS1:
N
222
S
NS1:
L
247
F
NS1:
I
264
T
NS1:
T
265
A
NS1:
K
272
R
NS1:
D
281
E
NS2A
NS2A:
V
5
I
NS2A:
K
135
R
NS2A:
M
136
I
NS2A:
I
171
A
NS2B
NS2B:
L
21
F
NS2B:
V
59
I
NS2B:
K
60
R
NS2B:
D
63
E
NS3
NS3:
M
13
V
NS3:
K
15
R
NS3:
A
120
T
NS3:
I
140
V
NS3:
A
160
T
NS3:
R
186
K
NS3:
V
273
I
NS3:
I
333
M
NS3:
V
395
I
NS3:
I
461
V
NS4A
NS4A:
D
23
N
NS4A:
R
76
K
NS4A:
I
89
V
NS4B
NS4B:
L
13
F
NS4B:
A
19
T
NS4B:
V
48
I
NS4B:
V
91
A
NS4B:
F
112
L
NS4B:
T
244
A
NS5
NS5:
I
5
T
NS5:
S
15
N
NS5:
M
70
L
NS5:
R
98
K
NS5:
I
135
T
NS5:
T
176
I
NS5:
Y
247
H
NS5:
I
271
T
NS5:
V
335
I
NS5:
R
430
G
NS5:
K
570
R
NS5:
G
605
V
NS5:
I
637
A
NS5:
Q
644
K
NS5:
A
648
V
NS5:
S
676
N
NS5:
I
687
V
NS5:
K
800
T
NS5:
A
865
T
prM
prM:
D
29
N
prM:
K
52
N
prM:
T
82
A
prM:
M
83
T
prM:
V
120
A
prM:
M
135
I
prM:
A
152
V
prM:
T
162
A
Deletions
N/A
Insertions
N/A
Nucleotide sequence
Reference-aligned nucleotide sequence
Reference-aligned amino acid sequences
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