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PP_007NYSZ.1
Download
Download FASTA
Download metadata TSV
Restricted-Use sequence
This sequence is only available under the
Restricted Use Terms
. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.
Chile/H1063/2023-06-30
Lissette Ulloa-Zepeda,
Catalina Pavez &
Cecilia Vial
Programa Hantavirus y Zoonosis, Universidad del Desarrollo Clínica Alemana
Sample details
Collection date
2023-06-30
Sampling location
Chile (Cautín, La Araucanía)
Data use terms
Data use terms
RESTRICTED
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/restricted-data
Host
Host
human (Homo sapiens)
Sequencing
Sequencing instrument
MinION
Submission details
Submission ID
H1063
Submitting group
Programa Hantavirus y Zoonosis
Date submitted
2026-10-01 18:41:58 UTC
Date released
2026-10-01 18:42:32 UTC
Earliest release date
2026-10-01
Files
Annotations
PP_007NYSZ.1.embl
Alignment and QC
Length S
1799 (95.9%)
# of SNPs S
125
# of inserted bases S
6
# of deleted bases S
2
# of unknown bases S
1
Length L
6482 (90.6%)
# of SNPs L
365
# of ambiguous bases L
1
# of unknown bases L
539
Length M
3512 (95.6%)
# of SNPs M
199
# of deleted bases M
1
# of unknown bases M
3
# of frame shifts M
2
Frame shifts M
GPC:1138-1139(nt:3461-3468),Gc:487-488(nt:3461-3468)
Nucleotide mutations
Mutations called relative to the
NC_003468.2
,
NC_003467.2
&
NC_003466.1
references
Substitutions
L
T
47
C
C
74
T
A
123
C
G
124
T
C
126
G
T
127
C
C
128
T
C
131
T
C
146
T
G
149
A
C
155
T
C
173
T
T
182
C
A
200
G
T
209
C
A
218
G
A
296
G
T
297
C
Show more
M
T
42
C
T
74
C
C
111
T
G
114
A
C
147
T
C
174
T
C
190
T
A
192
G
C
231
T
C
243
T
G
339
A
T
345
C
A
360
G
T
363
C
T
387
C
C
394
T
C
408
T
G
420
A
Show more
S
G
63
A
G
66
A
G
120
A
A
135
G
T
225
C
T
244
C
T
306
C
A
312
G
G
315
A
A
318
G
C
328
T
T
357
C
T
363
C
T
367
C
T
396
C
C
417
T
G
438
A
C
444
A
Show more
Deletions
M
3460
S
1443, 1573
Insertions
S
ins_1486:T, ins_1555:A, ins_1631:TTT, ins_1668:T
Amino acid substitutions
Substitutions called relative to the
NC_003468.2
,
NC_003467.2
&
NC_003466.1
references
Substitutions
GPC
GPC:
V
8
A
GPC:
H
294
Y
GPC:
V
346
I
GPC:
T
353
V
GPC:
I
537
V
GPC:
T
938
A
GPC:
T
1023
A
GPC:
I
1123
L
Gc
Gc:
T
287
A
Gc:
T
372
A
Gc:
I
472
L
Gn
Gn:
V
8
A
Gn:
H
294
Y
Gn:
V
346
I
Gn:
T
353
V
Gn:
I
537
V
NSs
NSs:
Q
5
R
NSs:
L
35
S
NSs:
I
62
T
RdRp
RdRp:
R
30
L
RdRp:
L
31
A
RdRp:
T
141
I
RdRp:
L
277
S
RdRp:
S
338
A
RdRp:
R
346
K
RdRp:
I
402
V
RdRp:
D
780
N
RdRp:
D
1303
E
RdRp:
S
1456
G
RdRp:
V
1665
I
RdRp:
K
1750
R
RdRp:
I
2109
V
RdRp:
T
2113
A
Deletions
GPC
GPC:1137
Gc
Gc:486
Insertions
N/A
Nucleotide sequences
Reference-aligned nucleotide sequences
Reference-aligned amino acid sequences
L
M
S
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