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PP_007NYR1.1
Download
Download FASTA
Download metadata TSV
Restricted-Use sequence
This sequence is only available under the
Restricted Use Terms
. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.
Chile/H1907/2019-01-05
Lissette Ulloa-Zepeda,
Catalina Pavez &
Cecilia Vial
Programa Hantavirus y Zoonosis, Universidad del Desarrollo Clínica Alemana
Sample details
Collection date
2019-01-05
Sampling location
Chile (Palena, Los Lagos)
Data use terms
Data use terms
RESTRICTED
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/restricted-data
Host
Host
human (Homo sapiens)
Sequencing
Sequencing instrument
Illumina MiSeq
Submission details
Submission ID
H1907
Submitting group
Programa Hantavirus y Zoonosis
Date submitted
2026-10-01 18:41:58 UTC
Date released
2026-10-01 18:42:32 UTC
Earliest release date
2026-10-01
Files
Annotations
PP_007NYR1.1.embl
Alignment and QC
Length M
3613 (98.2%)
# of SNPs M
206
# of inserted bases M
9
Length S
1800 (95.9%)
# of SNPs S
119
# of inserted bases S
7
# of deleted bases S
2
Length L
6482 (98.8%)
# of SNPs L
375
# of ambiguous bases L
2
Nucleotide mutations
Mutations called relative to the
NC_003468.2
,
NC_003467.2
&
NC_003466.1
references
Substitutions
L
T
47
C
G
53
A
C
74
T
A
86
G
G
89
A
C
131
T
T
143
C
C
146
T
C
147
T
G
149
A
C
155
T
T
182
C
A
200
G
A
218
G
A
296
G
T
297
C
A
302
G
T
326
C
Show more
M
T
74
C
G
114
A
C
159
A
C
174
T
C
190
T
A
192
G
C
231
T
C
243
T
A
264
G
T
324
C
G
339
A
T
345
C
A
360
G
T
363
C
T
387
C
C
394
T
C
408
T
T
414
C
Show more
S
T
61
C
G
63
A
G
66
A
G
120
A
A
135
G
C
172
T
A
219
G
T
225
C
A
240
G
T
244
C
A
261
G
T
306
C
A
312
G
G
315
A
A
318
G
T
357
C
T
363
C
T
366
C
Show more
Deletions
S
1443, 1573
Insertions
M
ins_3504:ATATACAT, ins_3601:A
S
ins_1482:CC, ins_1555:G, ins_1631:TTT, ins_1668:T
Amino acid substitutions
Substitutions called relative to the
NC_003468.2
,
NC_003467.2
&
NC_003466.1
references
Substitutions
GPC
GPC:
V
8
A
GPC:
F
216
L
GPC:
H
294
Y
GPC:
V
346
I
GPC:
T
353
I
GPC:
V
499
I
GPC:
I
537
V
GPC:
T
641
I
GPC:
T
938
A
GPC:
T
1023
A
GPC:
V
1115
I
Gc
Gc:
T
287
A
Gc:
T
372
A
Gc:
V
464
I
Gn
Gn:
V
8
A
Gn:
F
216
L
Gn:
H
294
Y
Gn:
V
346
I
Gn:
T
353
I
Gn:
V
499
I
Gn:
I
537
V
Gn:
T
641
I
NSs
NSs:
Q
5
R
NSs:
E
33
G
NSs:
L
35
S
NSs:
Q
40
R
NSs:
N
47
S
NSs:
I
62
T
RdRp
RdRp:
T
141
V
RdRp:
L
277
S
RdRp:
S
338
A
RdRp:
R
346
K
RdRp:
N
364
S
RdRp:
D
780
N
RdRp:
S
876
A
RdRp:
N
1033
D
RdRp:
D
1303
E
RdRp:
S
1440
N
RdRp:
K
1750
R
RdRp:
Q
1965
H
RdRp:
I
2109
V
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Reference-aligned nucleotide sequences
Reference-aligned amino acid sequences
L
M
S
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