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PP_007NYM9.1
Download
Download FASTA
Download metadata TSV
Restricted-Use sequence
This sequence is only available under the
Restricted Use Terms
. This prohibits publications that use this sequence as focal data during the restricted-use period, except with the consent of the sequence submitters.
Chile/H116/2019-04-01
Lissette Ulloa-Zepeda,
Catalina Pavez &
Cecilia Vial
Programa Hantavirus y Zoonosis, Universidad del Desarrollo Clínica Alemana
Sample details
Collection date
2019-04-01
Sampling location
Chile (Linares, Maule)
Data use terms
Data use terms
RESTRICTED
(history)
Data use terms URL
https://pathoplexus.org/about/terms-of-use/restricted-data
Host
Host
human (Homo sapiens)
Sequencing
Sequencing instrument
Illumina MiSeq
Submission details
Submission ID
H116
Submitting group
Programa Hantavirus y Zoonosis
Date submitted
2026-10-01 18:41:58 UTC
Date released
2026-10-01 18:42:32 UTC
Earliest release date
2026-10-01
Files
Annotations
PP_007NYM9.1.embl
Alignment and QC
Length M
3604 (94.3%)
# of SNPs M
493
# of unknown bases M
141
Length S
1806 (94.8%)
# of SNPs S
192
# of inserted bases S
5
# of deleted bases S
2
# of unknown bases S
29
Length L
6518 (95.7%)
# of SNPs L
852
# of ambiguous bases L
1
# of unknown bases L
237
Nucleotide mutations
Mutations called relative to the
NC_003468.2
,
NC_003467.2
&
NC_003466.1
references
Substitutions
L
T
47
C
A
65
G
T
68
C
G
71
A
C
74
G
T
113
C
A
116
T
G
119
C
C
128
T
C
131
T
C
146
T
G
149
T
A
198
C
A
200
G
T
216
C
T
227
A
A
243
G
T
245
C
Show more
M
T
66
C
T
74
C
T
75
A
G
86
A
A
89
G
T
90
G
G
93
C
C
111
T
G
114
A
G
126
A
A
132
G
A
138
G
G
144
A
C
147
T
T
168
A
C
171
T
C
180
A
A
184
T
Show more
S
G
66
A
A
69
G
C
72
T
G
133
A
A
135
G
C
156
A
C
172
T
T
225
C
G
231
A
A
240
G
T
244
C
T
262
C
C
310
T
A
321
G
C
328
T
G
330
A
G
339
A
T
342
C
Show more
Deletions
S
1571, 1572
Insertions
S
ins_1555:A, ins_1628:CTA, ins_1790:A
Amino acid substitutions
Substitutions called relative to the
NC_003468.2
,
NC_003467.2
&
NC_003466.1
references
Substitutions
GPC
GPC:
V
8
A
GPC:
C
12
Y
GPC:
Y
13
W
GPC:
T
45
S
GPC:
A
74
N
GPC:
F
78
Y
GPC:
V
107
I
GPC:
I
212
V
GPC:
S
213
T
GPC:
L
277
I
GPC:
H
294
Y
GPC:
V
346
I
GPC:
T
353
I
GPC:
V
499
I
GPC:
V
504
I
GPC:
I
507
V
GPC:
I
508
V
GPC:
T
523
N
Show more
Gc
Gc:
M
5
L
Gc:
I
19
V
Gc:
S
52
A
Gc:
A
329
S
Gc:
T
345
S
Gc:
T
372
A
Gc:
L
408
I
Gc:
V
465
I
Gc:
L
469
F
Gn
Gn:
V
8
A
Gn:
C
12
Y
Gn:
Y
13
W
Gn:
T
45
S
Gn:
A
74
N
Gn:
F
78
Y
Gn:
V
107
I
Gn:
I
212
V
Gn:
S
213
T
Gn:
L
277
I
Gn:
H
294
Y
Gn:
V
346
I
Gn:
T
353
I
Gn:
V
499
I
Gn:
V
504
I
Gn:
I
507
V
Gn:
I
508
V
Gn:
T
523
N
Show more
N
N:
A
31
T
N:
D
38
E
N:
A
256
S
N:
I
281
V
NSs
NSs:
Q
5
R
NSs:
T
12
K
NSs:
L
35
S
NSs:
G
37
D
NSs:
Q
40
R
RdRp
RdRp:
D
13
E
RdRp:
I
70
V
RdRp:
V
135
I
RdRp:
T
141
I
RdRp:
R
144
K
RdRp:
P
149
S
RdRp:
S
273
T
RdRp:
L
277
M
RdRp:
L
279
S
RdRp:
I
321
L
RdRp:
S
338
A
RdRp:
R
346
K
RdRp:
L
371
I
RdRp:
L
398
I
RdRp:
I
402
V
RdRp:
I
435
V
RdRp:
N
443
H
RdRp:
I
510
V
Show more
Deletions
N/A
Insertions
N/A
Nucleotide sequences
Reference-aligned nucleotide sequences
Reference-aligned amino acid sequences
L
M
S
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