PP_007NYLB.1

Chile/H114/2019-05-06
Lissette Ulloa-Zepeda, Catalina Pavez & Cecilia Vial

Programa Hantavirus y Zoonosis, Universidad del Desarrollo Clínica Alemana

Sample details

Collection date
2019-05-06
Sampling location
Chile (-, -)

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Host

Host

Sequencing

Sequencing instrument
Illumina MiSeq

Submission details

Submission ID
H114
Submitting group
Date submitted
2026-10-01 18:41:58 UTC
Date released
2026-10-01 18:42:32 UTC
Earliest release date
2026-10-01

Files

Annotations

Alignment and QC

Length S
1807 (96.3%)
# of SNPs S
125
# of inserted bases S
6
# of deleted bases S
2
# of ambiguous bases S
2
# of stop codons S
1
Stop Codons S
NSs:23

Nucleotide mutations

Mutations called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

S

  • G63A
  • G66A
  • G120A
  • A135G
  • G179A
  • C188T
  • A219G
  • T225C
  • G231A
  • T244C
  • T306C
  • A312G
  • G315A
  • A318G
  • C328T
  • T357C
  • T363C
  • C417T
Deletions

S

1443, 1573
Insertions

S

ins_1487:T, ins_1555:A, ins_1631:TTT, ins_1668:T

Amino acid substitutions

Substitutions called relative to the NC_003468.2, NC_003467.2 & NC_003466.1 references

Substitutions

N

  • N:S46N
  • N:A49V

NSs

  • NSs:Q5R
  • NSs:V20I
  • NSs:Q23*
  • NSs:E33G
  • NSs:L35S
  • NSs:G37D
  • NSs:I62T
Deletions
N/A
Insertions
N/A

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