PP_007JWQD.1

Brazil/ITpS_xTM_001na_001/2026-05-17
A. Pérez, R. Moreira & J. Dutra

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2026-05-17
Sampling location
Brazil (Minas Gerais)
City
Betim

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
B.D.4.1.1

Host

Host
Host age
0.6
Host gender
Female

Sequencing

Sequencing instrument
ILLUMINA
Depth of coverage
348

Submission details

Submission ID
ITpS_xTM_001na_001
Submitting group
Date submitted
2026-08-28 13:46:51 UTC
Date released
2026-08-28 13:48:25 UTC
Earliest release date
2026-08-28

Alignment and QC

Length
13773 (91.3%)
# of SNPs
141
# of inserted bases
6
# of deleted bases
126
# of frame shifts
2
Frame shifts
N:98-392(nt:1387-2272),G:106-311(nt:4960-5578)

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • C1148T
  • C1591T
  • C1714A
  • G1732A
  • T1846C
  • G1963A
  • C1996T
  • C2074T
  • C2198T
  • T2285A
  • T2340C
  • T2457C
  • C2484T
  • A2518G
  • C2554T
  • T2697C
  • G2787A
  • T2874C
Deletions
1361-1386, 4580, 4581, 4865-4959, 9364-9366
Insertions
ins_3200:GAAGAA

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:S190N
  • F:R209Q
  • F:S211N

L

  • L:Q243R
  • L:K260R
  • L:K570R
  • L:M646L
  • L:G1429V
  • L:Y1590H
  • L:R1759K
  • L:R1872K
  • L:T1987I
  • L:L2017F
  • L:A2119T

M2-1

  • M2-1:S179P

M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:C49F

P

  • P:T72A
Deletions

G

G:74-105

L

L:283

N

N:89-97
Insertions
N/A

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