PP_007JWPF.1

Brazil/ITpS_L31_001nV_001/2026-05-10
A. Pérez, R. Moreira & J. Dutra

Universidade Federal de Minas Gerais (UFMG)

Sample details

Collection date
2026-05-10
Sampling location
Brazil (Minas Gerais)
City
Belo Horizonte

Data use terms

Data use terms
RESTRICTED
Data use terms URL

Lineage

Lineage
B.D.4.1.1

Host

Host
Host age
0.5
Host gender
Male

Sequencing

Sequencing instrument
ILLUMINA
Depth of coverage
1501

Submission details

Submission ID
ITpS_L31_001nV_001
Submitting group
Date submitted
2026-08-28 13:46:51 UTC
Date released
2026-08-28 13:48:25 UTC
Earliest release date
2026-08-28

Alignment and QC

Length
12784 (98.5%)
# of SNPs
117
# of inserted bases
25
# of deleted bases
2237
# of frame shifts
1
Frame shifts
NS2:43-125(nt:708-958)

Nucleotide mutations

Mutations called relative to the OP975389.1 reference

Substitutions
  • G1A
  • C3G
  • C152A
  • C212T
  • G513T
  • C564T
  • G579A
  • C598T
  • G709T
  • A713C
  • C952A
  • G955A
  • G1385A
  • C1591T
  • C1714A
  • G1732A
  • C1792T
  • C1794A
Deletions
966, 967, 2923-5157
Insertions
ins_0:AACTTGCACACTCGAAAAAA, ins_707:GTCTC

Amino acid substitutions

Substitutions called relative to the OP975389.1 reference

Substitutions

F

  • F:S190N
  • F:R209Q
  • F:S211N

G

  • G:P214S
  • G:P221L
  • G:I252T
  • G:I268T
  • G:A269V

L

  • L:S100T
  • L:K260R
  • L:K570R
  • L:M646L
  • L:G1429V
  • L:V1592I
  • L:R1759K
  • L:R1872K
  • L:I1932V
  • L:T1987I
  • L:L2017F
  • L:A2119T

M2-1

  • M2-1:S179P

M2-2

  • M2-2:I2T
  • M2-2:M27T
  • M2-2:C49F

N

  • N:V97I
  • N:T233K

NS1

  • NS1:D32E

P

  • P:T72A
Deletions
N/A
Insertions

NS2

ins_NS2:41:C

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